View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0342_low_10 (Length: 347)
Name: NF0342_low_10
Description: NF0342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0342_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 23 - 319
Target Start/End: Original strand, 55714711 - 55715008
Alignment:
| Q |
23 |
gacactcttcaaattagacgtgtcccaatgtcgaacattgacatatataatacaatgaattatgtcatttttaaaaattattgtcgatgtacatgtcata |
122 |
Q |
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| T |
55714711 |
gacactcttcaaattagacgtgtctcaatgtcgaacattgacatatataatacagtgaattatgtcatttttaaaaattattgtcgatgtacgtgacata |
55714810 |
T |
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| Q |
123 |
cttcatattgtcgtgtttgttcttcatagnnnnnnnnnnnnnnn-ctaatgcaaatagttttgaacaattcttgctaaacttattttatatannnnnnna |
221 |
Q |
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| T |
55714811 |
cttcatattgtcgtgtttgttcttcatagaagaaagaaaaaaaaactaatgcaaatagttttgaacaattcttgctaaacttattttatatattttttta |
55714910 |
T |
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| Q |
222 |
tgaaaagaagtttagattatttgaatctcataaattcatcaattcagatatcttaaaagtcatacaaatctcaaggctcaaaaagtattgacatagat |
319 |
Q |
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| T |
55714911 |
tgaaaagaagtttagattatttgaatctcataaattcatcaattcagatatcttaaaagtcatacaaatctcaaggctcaaaaagtattgacatagat |
55715008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 210
Target Start/End: Original strand, 55715738 - 55715771
Alignment:
| Q |
177 |
tagttttgaacaattcttgctaaacttattttat |
210 |
Q |
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| T |
55715738 |
tagttttgaacaattcttgctaaaattattttat |
55715771 |
T |
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