View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0342_low_13 (Length: 318)
Name: NF0342_low_13
Description: NF0342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0342_low_13 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 79 - 318
Target Start/End: Original strand, 35105790 - 35106030
Alignment:
| Q |
79 |
atgagatgga-catcatcataaaaaccagggaaaacagtttgtttcaatttttcatggcattcagcaatagtagccatctcttccaaacaccacgttgaa |
177 |
Q |
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| T |
35105790 |
atgagatggatcaacatcataaaaaacagggaaaacagtttgtttcaatcttttacggcattcagcaacagtagccatctcttccaaacaccatgttgac |
35105889 |
T |
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| Q |
178 |
tcggcatatctttgagagaagacaacaatagaaattcttgaactttgaattgcttgtagaagttgcggtgaaagggattctcctttctcaagcctttgat |
277 |
Q |
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| T |
35105890 |
tcggcatatctttcagagaagacaacaatagaaacccgagaattttgaattgcttgaagaagttgcggcgaaagggattctcctttctcaagcctttgat |
35105989 |
T |
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| Q |
278 |
catccttgaaggcaaaaataccctttctttttagatgagca |
318 |
Q |
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| T |
35105990 |
catccttgaaggcaaaaataccctttctttttagatgagca |
35106030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 92 - 318
Target Start/End: Original strand, 35183753 - 35183979
Alignment:
| Q |
92 |
catcataaaaaccagggaaaacagtttgtttcaatttttcatggcattcagcaatagtagccatctcttccaaacaccacgttgaatcggcatatctttg |
191 |
Q |
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| T |
35183753 |
catcataaaaaatagggaaaacagtctgtttcaattctgtatgatattcagcaatagtggccatctcttccaaacataatgttgactccgcataattttt |
35183852 |
T |
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| Q |
192 |
agagaagacaacaatagaaattcttgaactttgaattgcttgtagaagttgcggtgaaagggattctcctttctcaagcctttgatcatccttgaaggca |
291 |
Q |
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| T |
35183853 |
agagaagacaacaatagaaatccgagaactttgaattgcttgtagaagttgcggcgaaagggattctcctttttcaagtcttttgtcatccttgaaagcg |
35183952 |
T |
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| Q |
292 |
aaaataccctttctttttagatgagca |
318 |
Q |
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| T |
35183953 |
aaaatacccttagttgttagatgagca |
35183979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 92 - 318
Target Start/End: Original strand, 35054891 - 35055117
Alignment:
| Q |
92 |
catcataaaaaccagggaaaacagtttgtttcaatttttcatggcattcagcaatagtagccatctcttccaaacaccacgttgaatcggcatatctttg |
191 |
Q |
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| T |
35054891 |
catcataaaaaatagggaaaactgtttgtttgaaatactcacaacaatcagcaattgcagccatctcttccaaacaccaagttgattcggcatatgtttt |
35054990 |
T |
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| Q |
192 |
agagaagacaacaatagaaattcttgaactttgaattgcttgtagaagttgcggtgaaagggattctcctttctcaagcctttgatcatccttgaaggca |
291 |
Q |
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| T |
35054991 |
agagaagacaacaataaaaattcgcgaatttcgaattgcttgtagaagctgcggtgaaataaattctcctttctcaagacttttgtcatccttgaaggca |
35055090 |
T |
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| Q |
292 |
aaaataccctttctttttagatgagca |
318 |
Q |
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| T |
35055091 |
aaaataccttttcttgttagatgagca |
35055117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 93 - 318
Target Start/End: Original strand, 35177756 - 35177981
Alignment:
| Q |
93 |
atcataaaaaccagggaaaacagtttgtttcaatttttcatggcattcagcaatagtagccatctcttccaaacaccacgttgaatcggcatatctttga |
192 |
Q |
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| T |
35177756 |
atcataaaaaacagggaaaacagtttgtaagaaattgctacgacattcaacaatagtagccatttcttccaaacaccatgttgactcagcatatctttct |
35177855 |
T |
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| Q |
193 |
gagaagacaacaatagaaattcttgaactttgaattgcttgtagaagttgcggtgaaagggattctcctttctcaagcctttgatcatccttgaaggcaa |
292 |
Q |
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| T |
35177856 |
gagaagacaacgatagatatccgtgaatttgcaattgcttgtcgaagttgcagcgaaaggcattctcctttctcgagccttttatcatccttgaacgcaa |
35177955 |
T |
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| Q |
293 |
aaataccctttctttttagatgagca |
318 |
Q |
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||||||| |||||| ||||||||||| |
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| T |
35177956 |
aaataccttttcttgttagatgagca |
35177981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 138 - 318
Target Start/End: Original strand, 35169510 - 35169690
Alignment:
| Q |
138 |
ttcagcaatagtagccatctcttccaaacaccacgttgaatcggcatatctttgagagaagacaacaatagaaattcttgaactttgaattgcttgtaga |
237 |
Q |
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|||| |||| |||||||| |||||||||||||| ||||| || |||||||||| |||||||||||||||||||| | |||| || |||||||||| || |
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| T |
35169510 |
ttcaacaatggtagccatttcttccaaacaccatgttgactcagcatatctttctgagaagacaacaatagaaatccgtgaatttgtaattgcttgtcga |
35169609 |
T |
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| Q |
238 |
agttgcggtgaaagggattctcctttctcaagcctttgatcatccttgaaggcaaaaataccctttctttttagatgagca |
318 |
Q |
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| T |
35169610 |
tgttgcgttgaaaagcattctcctttctctagccttttatcatccttgaaggcgaaaacaccctttctagttagatgagca |
35169690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 317
Target Start/End: Complemental strand, 25484514 - 25484341
Alignment:
| Q |
144 |
aatagtagccatctcttccaaacaccacgttgaatcggcata-tctttgagagaagacaacaatagaaattcttgaactttgaattgcttgtagaagttg |
242 |
Q |
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||||| |||||| || ||||||||||| |||||| ||||| |||||| ||||| ||||| |||||||| | ||| ||||||||||||||||||||| |
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| T |
25484514 |
aatagcagccatttcatccaaacaccatgttgaagaagcataatctttg-gagaaaacaacgatagaaatgcgtgactgttgaattgcttgtagaagttg |
25484416 |
T |
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| Q |
243 |
cggtgaaagggattctcctttctcaagcctttgatcatccttgaaggcaaaaataccctttctttttagatgagc |
317 |
Q |
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| T |
25484415 |
gggtgaaatggcttctcctttctgtagctgcttgtcatccttgaaggtgaaaataccttttctattgagatgagc |
25484341 |
T |
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