View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0342_low_14 (Length: 311)
Name: NF0342_low_14
Description: NF0342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0342_low_14 |
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| [»] scaffold0036 (1 HSPs) |
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| [»] scaffold0004 (1 HSPs) |
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| [»] scaffold0361 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 247 - 295
Target Start/End: Complemental strand, 41570378 - 41570330
Alignment:
| Q |
247 |
ttccttaccaagtccaggcatatccaaacgaagaaggagagaatccttt |
295 |
Q |
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| T |
41570378 |
ttccttaccaagtccaggcgtatccaaacgaagaaggagagaatccttt |
41570330 |
T |
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Target: scaffold0036 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 247 - 293
Target Start/End: Complemental strand, 98539 - 98493
Alignment:
| Q |
247 |
ttccttaccaagtccaggcatatccaaacgaagaaggagagaatcct |
293 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
98539 |
ttccttaccaagtccaggcatatccaaacgaagaagcagagaatcct |
98493 |
T |
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Target: scaffold0004 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 247 - 293
Target Start/End: Complemental strand, 246890 - 246844
Alignment:
| Q |
247 |
ttccttaccaagtccaggcatatccaaacgaagaaggagagaatcct |
293 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
246890 |
ttccttaccaagtccaggcatatccaaacgaagaagcagagaatcct |
246844 |
T |
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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 247 - 293
Target Start/End: Complemental strand, 31231375 - 31231329
Alignment:
| Q |
247 |
ttccttaccaagtccaggcatatccaaacgaagaaggagagaatcct |
293 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31231375 |
ttccttaccaagtccaggcatatccaaacgaagaagcagagaatcct |
31231329 |
T |
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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 247 - 293
Target Start/End: Original strand, 36237118 - 36237164
Alignment:
| Q |
247 |
ttccttaccaagtccaggcatatccaaacgaagaaggagagaatcct |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
36237118 |
ttccttaccaagtccaggcatatccaaacgaagaagcagaaaatcct |
36237164 |
T |
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Target: scaffold0361 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 293
Target Start/End: Original strand, 8999 - 9045
Alignment:
| Q |
247 |
ttccttaccaagtccaggcatatccaaacgaagaaggagagaatcct |
293 |
Q |
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||||||||||||||||||||||||||||||||| || ||| |||||| |
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| T |
8999 |
ttccttaccaagtccaggcatatccaaacgaaggagcagacaatcct |
9045 |
T |
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