View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0342_low_17 (Length: 285)
Name: NF0342_low_17
Description: NF0342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0342_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 29 - 280
Target Start/End: Complemental strand, 25802915 - 25802664
Alignment:
| Q |
29 |
accgtggttgttgaggtaaaaggtgcattggctgaggatccggaattgatagggttggctgtcaaatatgctggtgatgcagtcgacatgtgcgaacgta |
128 |
Q |
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| T |
25802915 |
accgtggttgttgaggtaaaaggagcattggctgaggatccggaattgatagggttggctgtcaaatatgctggtgatgcagtcgacatgtgcgaacgta |
25802816 |
T |
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| Q |
129 |
gcttagctaatgaaaagattgttaatatttcttccattgctacactgaatcatgagatggagttgtatgctgatattgtagtgatagctggaggtcatct |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
25802815 |
gcttagctaatgaaaagattgttaatatttcttccattgctacactgaatcatgagatggagttgtatactgatattgtagtgatagctggaggtcatct |
25802716 |
T |
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| Q |
229 |
atgaatcaaaaaatttatattgaatgaataaatttgcaattttcatctcact |
280 |
Q |
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| T |
25802715 |
atgaatcaaaaaatttatattgaatgaataaaattgcaattttcatctcact |
25802664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 90 - 260
Target Start/End: Complemental strand, 23922432 - 23922262
Alignment:
| Q |
90 |
tcaaatatgctggtgatgcagtcgacatgtgcgaacgtagcttagctaatgaaaagattgttaatatttcttccattgctacactgaatcatgagatgga |
189 |
Q |
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| T |
23922432 |
tcaaatatgctagtgatgcacttggtaggtgtgaagatagcttagctcgtgaaaagaatgttaatacgtctgccattgctacattgaatcatgagatgca |
23922333 |
T |
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| Q |
190 |
gttgtatgctgatattgtagtgatagctggaggtcatctatgaatcaaaaaatttatattgaatgaataaa |
260 |
Q |
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| T |
23922332 |
gttatataatgatattgtattgatagccggaggccatctataaataaataaatttatatttcatgaataaa |
23922262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 127 - 260
Target Start/End: Complemental strand, 23914758 - 23914625
Alignment:
| Q |
127 |
tagcttagctaatgaaaagattgttaatatttcttccattgctacactgaatcatgagatggagttgtatgctgatattgtagtgatagctggaggtcat |
226 |
Q |
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|||||||||| |||||||| |||||||| ||| ||||||||||| |||||||||||||| |||| ||| |||||||||| ||||||| | ||| ||| |
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| T |
23914758 |
tagcttagctcgtgaaaagaatgttaatacgtctgccattgctacattgaatcatgagatgcagttatataatgatattgtattgatagccgcaggccat |
23914659 |
T |
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| Q |
227 |
ctatgaatcaaaaaatttatattgaatgaataaa |
260 |
Q |
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| T |
23914658 |
ctataaataaattaatttatatttcatgaataaa |
23914625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 24435898 - 24435842
Alignment:
| Q |
118 |
gtgcgaacgtagcttagctaatgaaaagattgttaatatttcttccattgctacact |
174 |
Q |
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| T |
24435898 |
gtgcgaacatagcttagttaatgaaaagattgttaatacttcttccctttctacact |
24435842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 41 - 230
Target Start/End: Complemental strand, 35079526 - 35079337
Alignment:
| Q |
41 |
gaggtaaaaggtgcattggctgaggatccggaattgatagggttggctgtcaaatatgctggtgatgcagtcgacatgtgcgaacgtagcttagctaatg |
140 |
Q |
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|||||| ||||||||||| |||||||||||| ||||| | |||||||||||||||||| | |||||| | |||||||| ||||||||||| ||||| | |
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| T |
35079526 |
gaggtacaaggtgcattgcgcgaggatccggaaatgataagcttggctgtcaaatatgctagcgatgcacttgacatgtgtgaacgtagcttggctaacg |
35079427 |
T |
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| Q |
141 |
aaaagattgttaatatttcttccattgctacactgaatcatgagatggagttgtatgctgatattgtagtgatagctggaggtcatctat |
230 |
Q |
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| T |
35079426 |
aaaagattgttaatacttcttccattgctgcattgaatcatgagatgatgttgtatacagatattgtagtcatagccggaggccatctat |
35079337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 32 - 245
Target Start/End: Complemental strand, 35074566 - 35074353
Alignment:
| Q |
32 |
gtggttgttgaggtaaaaggtgcattggctgaggatccggaattgatagggttggctgtcaaatatgctggtgatgcagtcgacatgtgcgaacgtagct |
131 |
Q |
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|||||| | |||||| ||||||||||| ||||||||||||| ||||| | |||||||||| |||||| | |||||| | |||||||| |||||||||| |
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| T |
35074566 |
gtggttatcgaggtacaaggtgcattgcgtgaggatccggaaatgataagcatggctgtcaattatgctagcgatgcacttgacatgtgtgaacgtagct |
35074467 |
T |
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| Q |
132 |
tagctaatgaaaagattgttaatatttcttccattgctacactgaatcatgagatggagttgtatgctgatattgtagtgatagctggaggtcatctatg |
231 |
Q |
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| ||| ||||||||||||| |||| ||||||||||| | ||||||||||||| ||| |||| || | |||||||||||||||| ||||| ||||||| |
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| T |
35074466 |
tggctgatgaaaagattgtcaatacttcttccattgttgcactgaatcatgacatgaagttatacacaaatattgtagtgatagccggaggccatctata |
35074367 |
T |
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| Q |
232 |
aatcaaaaaattta |
245 |
Q |
| |
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||| || ||||||| |
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| T |
35074366 |
aattaataaattta |
35074353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 189
Target Start/End: Original strand, 13436196 - 13436259
Alignment:
| Q |
126 |
gtagcttagctaatgaaaagattgttaatatttcttccattgctacactgaatcatgagatgga |
189 |
Q |
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| T |
13436196 |
gtagcttagttaatgaaaagatttttaatatttcttccatttctacaatgaatagtgagatgga |
13436259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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