View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0342_low_2 (Length: 481)
Name: NF0342_low_2
Description: NF0342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0342_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 29 - 381
Target Start/End: Original strand, 2243625 - 2243976
Alignment:
| Q |
29 |
agttaatctcatgaaattatcttataggcatacatataagataattgttccacatcatgcaaaattatttcaaacatatgagccttcatgcattataatt |
128 |
Q |
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| T |
2243625 |
agttaatctcatgaaattatcttataggcatacatataagataattgttccacatcatgcaaaattatttcaaacatatgagccttcatgcattataatt |
2243724 |
T |
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| Q |
129 |
tagaagcgttatatctttttc--------ggatacaagtcaaaaccatactgatacttgctctgcaaaacttgtacaataaggcacatggatcggtcagc |
220 |
Q |
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| T |
2243725 |
tagaagcgttatatctttttctgactttaggatacaagtcaaaaccatactgatacttgctctgcaaaa-ttgtacaataaggcacatggatcggtcagc |
2243823 |
T |
|
| Q |
221 |
atatgcatattctagactaatttcatggggaagcttttgg---tcatcatccccaaattcagatacagttttgctaattaccaaaatctgtggcatgnnn |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2243824 |
atatgcatattctagactaatttcatggggaagcttttggtcatcatcatccccaaattcagatacagttttgc---ttaccaaaatctgtggcatgaaa |
2243920 |
T |
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| Q |
318 |
nnnntgtaaaagcaacacgtttatagaaaaaggatgttacattattcacaactattggatcagt |
381 |
Q |
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| T |
2243921 |
aaaatgtaaaa--------tttatagaaaaaggatgttacattattcacaactattggatcagt |
2243976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 389 - 452
Target Start/End: Original strand, 23776727 - 23776787
Alignment:
| Q |
389 |
cagaacctgtgattacgttgttggcttaaatcatccatcatcatcaggagaaaaacaagaaaag |
452 |
Q |
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| T |
23776727 |
cagaccctgtgattacgttgttggcttaaataatc---catcatcaggagaaaaacaagaaaag |
23776787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 128; Significance: 6e-66; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 73 - 379
Target Start/End: Original strand, 31780416 - 31780722
Alignment:
| Q |
73 |
ttgttccacatcatgcaaaattatttcaaacatatgagccttcatgcattataatttagaagcgttatatctttttcgga--------tacaagtcaaaa |
164 |
Q |
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|||||||||||||||||| || ||||||||||||||||||||||||| ||| ||||||||| |||||| |||||||| || || ||||||||| |
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| T |
31780416 |
ttgttccacatcatgcaagatcatttcaaacatatgagccttcatgccttagaatttagaaacgttatttctttttctgacattagcatataagtcaaaa |
31780515 |
T |
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| Q |
165 |
ccatactgatacttgctctgcaaaacttgtacaataaggcacatggatcggtcagcatatgcatattctagactaatttcatggggaagcttttggtcat |
264 |
Q |
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| T |
31780516 |
ccatactgatactggctctacaaaacttgtacaataaggcacatggatcggtca------gcatattctagactaatttcatgtggaagc-cttggtcat |
31780608 |
T |
|
| Q |
265 |
catccccaaattcagatacagtt----ttgctaattaccaaaatctgtggcatgnnnnnnntgtaaaagcaacacgtttatagaaaaaggatgttacatt |
360 |
Q |
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|||||||||||||||||||| | |||| |||||||||||||||||||| ||||||||||||| ||||| || ||||||||||||| | |
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| T |
31780609 |
tatccccaaattcagatacagctagcattgc---ttaccaaaatctgtggcatgaaaaaaatgtaaaagcaacatgtttaaag--aaaggatgttacact |
31780703 |
T |
|
| Q |
361 |
attcacaactattggatca |
379 |
Q |
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| T |
31780704 |
attcacaactattggatca |
31780722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 54034182 - 54034223
Alignment:
| Q |
175 |
acttgctctgcaaaacttgtacaataaggcacatggatcggt |
216 |
Q |
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| T |
54034182 |
acttgctctacaaaacttgtacagtaaggcacatggatcggt |
54034223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 54034090 - 54034131
Alignment:
| Q |
82 |
atcatgcaaaattatttcaaacatatgagccttcatgcatta |
123 |
Q |
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| T |
54034090 |
atcacgcaaaatcattccaaacatatgagccttcatgcatta |
54034131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 428
Target Start/End: Complemental strand, 32298364 - 32298332
Alignment:
| Q |
396 |
tgtgattacgttgttggcttaaatcatccatca |
428 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
32298364 |
tgtgattacgttgttggcttaaatcatccatca |
32298332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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