View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0342_low_22 (Length: 246)
Name: NF0342_low_22
Description: NF0342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0342_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 25 - 239
Target Start/End: Complemental strand, 32127839 - 32127625
Alignment:
| Q |
25 |
gttgatgggaccaactaccgtttcatcctttatgtcatcattggatctgagtcctacccttacaaggcctttgtgcatgagaatgcatcgaagagcttca |
124 |
Q |
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| T |
32127839 |
gttgatgggaccaactaccgtttcatcctttatgtcatcattggatctgagtcctacccttacaaggcctttgtgcatgagaatgcatcgaagagcttca |
32127740 |
T |
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| Q |
125 |
agaaactcatttcctttgtatctattgattaatgtttaaattattagatgacgtttattatgtgatcttgtagcatcattttcatgtatgccttattatc |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32127739 |
agaaactcatttcctttgtatctattgattaatgtttaaattattagatgacgtttattatgtgatcttgtagcatcattttcatgtatgccttattatc |
32127640 |
T |
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| Q |
225 |
atacaaataaaattt |
239 |
Q |
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||||||||||||||| |
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| T |
32127639 |
atacaaataaaattt |
32127625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 25 - 239
Target Start/End: Complemental strand, 32148107 - 32147893
Alignment:
| Q |
25 |
gttgatgggaccaactaccgtttcatcctttatgtcatcattggatctgagtcctacccttacaaggcctttgtgcatgagaatgcatcgaagagcttca |
124 |
Q |
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||||||||||||||||||||| || |||||| || |||||||| |||| ||||||||||||| | ||| ||||| |||||||| | ||||| ||||| |
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| T |
32148107 |
gttgatgggaccaactaccgtctcctcctttctgccatcattgaatctatgtcctacccttaccaagccattgtgtatgagaatcgtttgaagaacttca |
32148008 |
T |
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| Q |
125 |
agaaactcatttcctttgtatctattgattaatgtttaaattattagatgacgtttattatgtgatcttgtagcatcattttcatgtatgccttattatc |
224 |
Q |
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| T |
32148007 |
agaaactcatttcctttgtacctattaattaatgcttaaattattagatgatgtttattatgtgattttatagcatcattttcatgtatgccttattatc |
32147908 |
T |
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| Q |
225 |
atacaaataaaattt |
239 |
Q |
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| ||||||||||||| |
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| T |
32147907 |
aaacaaataaaattt |
32147893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 32147799 - 32147762
Alignment:
| Q |
182 |
ttatgtgatcttgtagcatcattttcatgtatgcctta |
219 |
Q |
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|||||||||||| ||||||||||| ||||||||||||| |
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| T |
32147799 |
ttatgtgatcttatagcatcatttacatgtatgcctta |
32147762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 14453009 - 14453069
Alignment:
| Q |
179 |
ttattatgtgatcttgtagcatcattttcatgtatgccttattatcatacaaataaaattt |
239 |
Q |
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||||||||||||||| |||||||||| |||| |||| ||||||||||| | |||||||||| |
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| T |
14453009 |
ttattatgtgatcttatagcatcattatcatttatgtcttattatcatgccaataaaattt |
14453069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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