View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0342_low_23 (Length: 238)
Name: NF0342_low_23
Description: NF0342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0342_low_23 |
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| [»] chr1 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 28214308 - 28214545
Alignment:
| Q |
1 |
attcacctgcctcctaataaactcaatatgagagttttctaaattggaatgacaataatgaatattactatccataatgtttccaaactcagtgatatct |
100 |
Q |
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|||||| || |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
28214308 |
attcacttgtctcctaataaactcaacatgagagttttctaaattggaatggcaataatgaatattattatccataatgttttcaaactcagtgatatct |
28214407 |
T |
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| Q |
101 |
ctgttgcttcggttaaaataaaatgctacacatttcgaatcaacctcaaaatcaacattttgaagtcttggctcatgaatccatcgaatagcataaaaca |
200 |
Q |
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||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
28214408 |
ctgttgcttcggttaaaataatctgctacacgtttcgaatcaacctcaaaatcaacattttgaagtcttagctcatgaacccatcgaatagcataaaaca |
28214507 |
T |
|
| Q |
201 |
gtcccaaaacttcaccaacatctaccgagcaaatcggg |
238 |
Q |
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|||||||||||||| |||||||||||||||||| |||| |
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| T |
28214508 |
gtcccaaaacttcatcaacatctaccgagcaaaccggg |
28214545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 8 - 238
Target Start/End: Complemental strand, 39533738 - 39533508
Alignment:
| Q |
8 |
tgcctcctaataaactcaatatgagagttttctaaattggaatgacaataatgaatattactatccataatgtttccaaactcagtgatatctctgttgc |
107 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
39533738 |
tgcctcctaataaactcaacatgagagttttctaaattggaatggcaataatgaatattactatccataatgtttccaaactcagtgatagctctattgc |
39533639 |
T |
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| Q |
108 |
ttcggttaaaataaaatgctacacatttcgaatcaacctcaaaatcaacattttgaagtcttggctcatgaatccatcgaatagcataaaacagtcccaa |
207 |
Q |
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| T |
39533638 |
ttcggttaaaataatttgctacacgtttcgaatcaacctcaaaatcaacattttgaagtcttagctcatgaacccatcgaatagcataaaacagtcccaa |
39533539 |
T |
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| Q |
208 |
aacttcaccaacatctaccgagcaaatcggg |
238 |
Q |
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| T |
39533538 |
agcttcaccaacatctactgagcaaaccggg |
39533508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 25133209 - 25133138
Alignment:
| Q |
8 |
tgcctcctaataaactcaatatgagagttttctaaattggaatgacaataatgaatattactatccataatg |
79 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||||| ||| | || ||| |||||||||||||| |
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| T |
25133209 |
tgcctcctaataaactcaatatgagagtttattaaataggaattacataattggatactactatccataatg |
25133138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 8 - 235
Target Start/End: Complemental strand, 29704687 - 29704459
Alignment:
| Q |
8 |
tgcctcctaataaactcaatatgagagttttctaaattggaatgacaataatgaatattactatccataatgtttccaaactca-gtgatatctctgttg |
106 |
Q |
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|||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
29704687 |
tgcctcctaataaattcaacatgagagttttttaaattggaatgacaataatgaatattactatccataatgtttccaaactcaagtgatatctctattg |
29704588 |
T |
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| Q |
107 |
cttcggttaaaataaaatgctacacatttcgaatcaacctcaaaatcaacattttgaagtcttggctcatgaatccatcgaatagcataaaacagtccca |
206 |
Q |
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|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| || |
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| T |
29704587 |
attcggttaaaataatctgctacacgtttcgaatcaacctcaaaatcaacattttgaagtcttagctcatgaacccatcgaatagcataaaacagtcgca |
29704488 |
T |
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| Q |
207 |
aaacttcaccaacatctaccgagcaaatc |
235 |
Q |
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|| ||||||||||||||| ||| |||||| |
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| T |
29704487 |
aagcttcaccaacatctatcgaacaaatc |
29704459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 76 - 238
Target Start/End: Complemental strand, 18748571 - 18748409
Alignment:
| Q |
76 |
aatgtttccaaactcagtgatatctctgttgcttcggttaaaataaaatgctacacatttcgaatcaacctcaaaatcaacattttgaagtcttggctca |
175 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
18748571 |
aatgtttccaaactcagtgttatctctgttgcttcggttaaaataatctgctacacgtttcgaatcaacctcaaaatcaacattttgaagtcttagttca |
18748472 |
T |
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| Q |
176 |
tgaatccatcgaatagcataaaacagtcccaaaacttcaccaacatctaccgagcaaatcggg |
238 |
Q |
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|||| |||| ||||||||||||||||||||||| |||| ||||||||||||||||||| |||| |
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| T |
18748471 |
tgaacccattgaatagcataaaacagtcccaaagcttccccaacatctaccgagcaaaccggg |
18748409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 41162571 - 41162674
Alignment:
| Q |
10 |
cctcctaataaactcaatatgagagttttctaaattggaatgacaataatgaatattactatccataatgtttccaaactcagtgatatctctgttgctt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
41162571 |
cctcctaataaactcaatatgagagttttctaaattggaatgacaataatgaatattactatccataatgtttccaaactcaatgatatctctattgctt |
41162670 |
T |
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| Q |
110 |
cggt |
113 |
Q |
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|||| |
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| T |
41162671 |
cggt |
41162674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 41162678 - 41162722
Alignment:
| Q |
69 |
tatccataatgtttccaaactcagtgatatctctgttgcttcggt |
113 |
Q |
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||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
41162678 |
tatccataatgtttccaaactcaatgatatctctattgcttcggt |
41162722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 8 - 152
Target Start/End: Original strand, 52467923 - 52468067
Alignment:
| Q |
8 |
tgcctcctaataaactcaatatgagagttttctaaattggaatgacaataatgaatattactatccataatgtttccaaactcagtgatatctctgttgc |
107 |
Q |
| |
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||||| ||||||||||| | ||||||||| ||||||| | ||||| |||||||||||||||| |||| ||||||||||| | |||||| |||| |
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| T |
52467923 |
tgccttctaataaactctacatgagagttggctaaatttaagaagcaatactgaatattactatccacaatgattccaaactcaataatatcttcattgc |
52468022 |
T |
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| Q |
108 |
ttcggttaaaataaaatgctacacatttcgaatcaacctcaaaat |
152 |
Q |
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||||||| |||||| |||||||| |||||||| |||||||||| |
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| T |
52468023 |
ttcggttgaaataatctgctacacgcttcgaatctacctcaaaat |
52468067 |
T |
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