View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0342_low_26 (Length: 234)

Name: NF0342_low_26
Description: NF0342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0342_low_26
NF0342_low_26
[»] chr6 (14 HSPs)
chr6 (1-122)||(18710754-18710875)
chr6 (2-122)||(18704820-18704940)
chr6 (122-220)||(18704975-18705073)
chr6 (122-220)||(18710910-18711008)
chr6 (2-122)||(16899390-16899510)
chr6 (1-122)||(34766800-34766921)
chr6 (122-222)||(18161374-18161474)
chr6 (2-122)||(18161509-18161629)
chr6 (2-122)||(31359005-31359125)
chr6 (132-222)||(29541756-29541846)
chr6 (122-222)||(16899255-16899355)
chr6 (122-222)||(31358870-31358970)
chr6 (13-122)||(29541891-29542000)
chr6 (122-169)||(34766718-34766765)
[»] scaffold0014 (2 HSPs)
scaffold0014 (122-222)||(148017-148117)
scaffold0014 (2-122)||(148152-148272)
[»] scaffold0141 (2 HSPs)
scaffold0141 (1-121)||(20220-20340)
scaffold0141 (127-222)||(20084-20179)
[»] chr8 (5 HSPs)
chr8 (17-119)||(22832186-22832288)
chr8 (132-223)||(14892694-14892785)
chr8 (2-122)||(21211747-21211867)
chr8 (122-222)||(21211902-21212002)
chr8 (2-122)||(14892529-14892649)
[»] chr4 (12 HSPs)
chr4 (2-122)||(7845235-7845355)
chr4 (1-122)||(520689-520810)
chr4 (2-122)||(6693662-6693782)
chr4 (13-122)||(17150817-17150926)
chr4 (122-222)||(6693527-6693627)
chr4 (122-220)||(7845390-7845488)
chr4 (132-220)||(17150684-17150772)
chr4 (132-221)||(16254548-16254637)
chr4 (2-122)||(16254682-16254797)
chr4 (122-169)||(520845-520892)
chr4 (185-220)||(13791747-13791782)
chr4 (138-172)||(13791715-13791749)
[»] scaffold0313 (4 HSPs)
scaffold0313 (1-122)||(7213-7334)
scaffold0313 (1-122)||(10995-11116)
scaffold0313 (122-169)||(7131-7178)
scaffold0313 (122-169)||(10913-10960)
[»] scaffold0254 (2 HSPs)
scaffold0254 (1-122)||(6344-6465)
scaffold0254 (122-169)||(6500-6547)
[»] chr7 (23 HSPs)
chr7 (13-122)||(13284217-13284326)
chr7 (2-122)||(5389948-5390068)
chr7 (122-222)||(9544172-9544272)
chr7 (2-122)||(16140961-16141081)
chr7 (122-222)||(16141116-16141216)
chr7 (2-122)||(26305000-26305120)
chr7 (2-122)||(26361698-26361818)
chr7 (2-122)||(32099824-32099944)
chr7 (122-222)||(46498423-46498523)
chr7 (122-222)||(5390103-5390203)
chr7 (2-122)||(6535928-6536048)
chr7 (2-122)||(8502493-8502613)
chr7 (2-122)||(9544017-9544137)
chr7 (122-222)||(26304865-26304965)
chr7 (122-222)||(26361853-26361953)
chr7 (2-122)||(44898743-44898863)
chr7 (2-122)||(46498558-46498678)
chr7 (122-222)||(8502358-8502458)
chr7 (122-222)||(44898608-44898708)
chr7 (122-222)||(6535793-6535893)
chr7 (122-222)||(32099689-32099789)
chr7 (132-220)||(42596698-42596786)
chr7 (1-63)||(42596861-42596923)
[»] chr5 (13 HSPs)
chr5 (1-122)||(20949299-20949420)
chr5 (122-222)||(18362586-18362686)
chr5 (2-122)||(18362721-18362841)
chr5 (2-122)||(26201102-26201222)
chr5 (13-122)||(27413592-27413701)
chr5 (122-222)||(26201257-26201357)
chr5 (2-122)||(33940764-33940884)
chr5 (127-222)||(27413457-27413552)
chr5 (122-222)||(33940629-33940729)
chr5 (147-220)||(19781874-19781947)
chr5 (13-122)||(5601622-5601731)
chr5 (1-122)||(23375673-23375794)
chr5 (122-169)||(20949217-20949264)
[»] chr1 (5 HSPs)
chr1 (1-122)||(1987965-1988086)
chr1 (122-222)||(16156192-16156292)
chr1 (2-122)||(16156327-16156447)
chr1 (1-122)||(22959772-22959893)
chr1 (122-220)||(1988121-1988219)
[»] chr3 (9 HSPs)
chr3 (2-122)||(6423751-6423871)
chr3 (122-222)||(8974155-8974255)
chr3 (2-122)||(8974290-8974410)
chr3 (122-222)||(6423616-6423716)
chr3 (122-222)||(9538444-9538544)
chr3 (2-122)||(9538579-9538699)
chr3 (122-222)||(12387297-12387397)
chr3 (13-122)||(12387432-12387540)
chr3 (13-122)||(48979716-48979825)
[»] scaffold0058 (2 HSPs)
scaffold0058 (132-222)||(53472-53562)
scaffold0058 (2-122)||(53307-53427)
[»] chr2 (11 HSPs)
chr2 (1-122)||(27168762-27168883)
chr2 (2-122)||(9512541-9512661)
chr2 (2-122)||(18652662-18652782)
chr2 (2-122)||(45015797-45015917)
chr2 (122-222)||(9512696-9512796)
chr2 (122-222)||(18652527-18652627)
chr2 (128-215)||(45015669-45015756)
chr2 (13-122)||(22903583-22903692)
chr2 (13-122)||(1791998-1792107)
chr2 (132-172)||(22903498-22903538)
chr2 (122-169)||(27168918-27168965)
[»] scaffold0015 (1 HSPs)
scaffold0015 (1-131)||(189302-189431)
[»] scaffold0529 (1 HSPs)
scaffold0529 (13-90)||(1-78)
[»] scaffold0016 (1 HSPs)
scaffold0016 (1-122)||(16671-16792)


Alignment Details
Target: chr6 (Bit Score: 102; Significance: 9e-51; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 18710754 - 18710875
Alignment:
Q  1 ctttctgactgaaatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactca 100  Q
    ||||||||||  ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18710754 ctttctgactccaatgtcaattctagtttctttgacatgagatgtaccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactca 18710853  T
Q  101 tcaactctttcactttcttcca 122  Q
    ||||||||| ||||||||||||    
T  18710854 tcaactcttgcactttcttcca 18710875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 2 - 122
Target Start/End: Original strand, 18704820 - 18704940
Alignment:
Q  2 tttctgactgaaatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactcat 101  Q
    |||||||||  ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18704820 tttctgactccaatgtcaattctagtttctttgacatgagatgtaccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactcat 18704919  T
Q  102 caactctttcactttcttcca 122  Q
    |||||||| ||||||||||||    
T  18704920 caactcttgcactttcttcca 18704940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 122 - 220
Target Start/End: Original strand, 18704975 - 18705073
Alignment:
Q  122 agaggttagtaatacctgagctttttcatttgttgaccatgcactcttttcctttacagctccttctttggttgttgcaacaaagtctccatctttgat 220  Q
    |||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  18704975 agagtttagtaatacatgagctttttcatctgttgaccatgcactcttttcctttacagctccttatttggttgttgcaacaaagtctccatctgtgat 18705073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 122 - 220
Target Start/End: Original strand, 18710910 - 18711008
Alignment:
Q  122 agaggttagtaatacctgagctttttcatttgttgaccatgcactcttttcctttacagctccttctttggttgttgcaacaaagtctccatctttgat 220  Q
    |||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  18710910 agagtttagtaatacatgagctttttcatctgttgaccatgcactcttttcctttacagctccttatttggttgttgcaacaaagtctccatctgtgat 18711008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 122
Target Start/End: Complemental strand, 16899510 - 16899390
Alignment:
Q  2 tttctgactgaaatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactcat 101  Q
    |||||||||  ||||||||||||||||||||||||| ||||||| || |||||||||| | ||||||| |||||||| ||||| |||||| |||| ||||    
T  16899510 tttctgactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgtattttcagagtatctcatacttctttagcatttgtacattcat 16899411  T
Q  102 caactctttcactttcttcca 122  Q
    |||||||||||||||||||||    
T  16899410 caactctttcactttcttcca 16899390  T

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Target: chr6; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 34766921 - 34766800
Alignment:
Q  1 ctttctgactgaaatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactca 100  Q
    ||||||||||  |||||||||||| |||||||||||| ||||||| ||||||||||||||| |||  || || ||||||||||| |||||||| || |||    
T  34766921 ctttctgactccaatgtcaattctggtttctttgacatgagatgtaccttcatgatgtactttcaaggtatcccatacctctttagcatttttgcattca 34766822  T
Q  101 tcaactctttcactttcttcca 122  Q
    ||||||||||||||||||||||    
T  34766821 tcaactctttcactttcttcca 34766800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 18161474 - 18161374
Alignment:
Q  122 agaggttagtaatacctgagctttttcatttgttgaccatgcactcttttcctttacagctccttctttggttgttgcaacaaagtctccatctttgatg 221  Q
    |||| |||||||||||||||||||||||| ||||||||||||||| ||| | || |||||||||||||||||||||| |||||||||||||||| |||||    
T  18161474 agagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagctccttctttggttgttggaacaaagtctccatctgtgatg 18161375  T
Q  222 a 222  Q
    |    
T  18161374 a 18161374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 2 - 122
Target Start/End: Complemental strand, 18161629 - 18161509
Alignment:
Q  2 tttctgactgaaatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactcat 101  Q
    |||||||||  ||||||||||||||||||||||||| ||||||| || |||||||||| | ||||||| || ||||| ||||| |||||| |||| ||||    
T  18161629 tttctgactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgtattttcagagtatcccatacttctttagcatttgtacattcat 18161530  T
Q  102 caactctttcactttcttcca 122  Q
    |||||||||||||||||||||    
T  18161529 caactctttcactttcttcca 18161509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 2 - 122
Target Start/End: Complemental strand, 31359125 - 31359005
Alignment:
Q  2 tttctgactgaaatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactcat 101  Q
    |||||||||  ||||||||||||||||||||||||| ||||||| || |||||||||| | ||||||| || ||||| ||||| |||||| |||| ||||    
T  31359125 tttctgactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgtattttcagagtatcccatacttctttagcatttgtacattcat 31359026  T
Q  102 caactctttcactttcttcca 122  Q
    |||||||||||||||||||||    
T  31359025 caactctttcactttcttcca 31359005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 132 - 222
Target Start/End: Complemental strand, 29541846 - 29541756
Alignment:
Q  132 aatacctgagctttttcatttgttgaccatgcactcttttcctttacagctccttctttggttgttgcaacaaagtctccatctttgatga 222  Q
    ||||||||||| ||||||| ||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||| ||||||    
T  29541846 aatacctgagccttttcatctgttgaccatgcactcttttctttgacagctccttctttggttgttggaacaaagtctccatctatgatga 29541756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 16899355 - 16899255
Alignment:
Q  122 agaggttagtaatacctgagctttttcatttgttgaccatgcactcttttcctttacagctccttctttggttgttgcaacaaagtctccatctttgatg 221  Q
    |||| |||||||||||||||||||||||| ||||||||||||||| ||| | || |||||||||||||||||||||| |||| ||||||||||| |||||    
T  16899355 agagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagctccttctttggttgttggaacatagtctccatctgtgatg 16899256  T
Q  222 a 222  Q
    |    
T  16899255 a 16899255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 31358970 - 31358870
Alignment:
Q  122 agaggttagtaatacctgagctttttcatttgttgaccatgcactcttttcctttacagctccttctttggttgttgcaacaaagtctccatctttgatg 221  Q
    |||| |||||||||||||||||||||||| ||||||||||||||| ||| | || |||||||||||||||||||||| |||||||||| ||| | |||||    
T  31358970 agagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagctccttctttggttgttggaacaaagtcttcatttgtgatg 31358871  T
Q  222 a 222  Q
    |    
T  31358870 a 31358870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 29542000 - 29541891
Alignment:
Q  13 aatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactcatcaactctttca 112  Q
    ||||||||||||||||||||||||| |||||   || |||||||||| | |||  || || ||||||||||| ||||| ||||| |||||||||||||||    
T  29542000 aatgtcaattctagtttctttgacatgagattgaccctcatgatgtattttcaaggtatcccatacctctttagcattcttacattcatcaactctttca 29541901  T
Q  113 ctttcttcca 122  Q
    ||||||||||    
T  29541900 ctttcttcca 29541891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 169
Target Start/End: Complemental strand, 34766765 - 34766718
Alignment:
Q  122 agaggttagtaatacctgagctttttcatttgttgaccatgcactctt 169  Q
    |||| |||| ||||||||||| ||||||| ||||||||||||||||||    
T  34766765 agagtttagcaatacctgagccttttcatctgttgaccatgcactctt 34766718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 148117 - 148017
Alignment:
Q  122 agaggttagtaatacctgagctttttcatttgttgaccatgcactcttttcctttacagctccttctttggttgttgcaacaaagtctccatctttgatg 221  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  148117 agagtttagtaatacctgagctttttcatttgttgaccatgcactcttttcctttacagctccttctttggttgttggaacaaagtctccatctgtgatg 148018  T
Q  222 a 222  Q
    |    
T  148017 a 148017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 2 - 122
Target Start/End: Complemental strand, 148272 - 148152
Alignment:
Q  2 tttctgactgaaatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactcat 101  Q
    |||||||||  ||||||||||||||||||||||||| |||| || || |||||||||| | | |  || || ||||||||||| ||||| ||||| ||||    
T  148272 tttctgactccaatgtcaattctagtttctttgacatgagaagtaccctcatgatgtatttttaaggtatcacatacctctttagcattcttacattcat 148173  T
Q  102 caactctttcactttcttcca 122  Q
    |||||||||||||||||||||    
T  148172 caactctttcactttcttcca 148152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 20340 - 20220
Alignment:
Q  1 ctttctgactgaaatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactca 100  Q
    ||||||||||  |||||||||||||||| |||||||| ||||||| |||| ||||||||||||||||||||| ||||| |||||||||||||||||| ||    
T  20340 ctttctgactccaatgtcaattctagttcctttgacatgagatgtacctttatgatgtactctcagagtgtcccatacatctttggcatttttacacaca 20241  T
Q  101 tcaactctttcactttcttcc 121  Q
    |||||||||||||||||||||    
T  20240 tcaactctttcactttcttcc 20220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 127 - 222
Target Start/End: Complemental strand, 20179 - 20084
Alignment:
Q  127 ttagtaatacctgagctttttcatttgttgaccatgcactcttttcctttacagctccttctttggttgttgcaacaaagtctccatctttgatga 222  Q
    ||||||||||||||| |||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  20179 ttagtaatacctgagatttttcatctgttgaccatgcacttttttcttttacagctccttctttggttgttggaacaaagtctccatctgtgatga 20084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 22832288 - 22832186
Alignment:
Q  17 tcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactcatcaactctttcacttt 116  Q
    ||||||||||||||||||| | ||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  22832288 tcaattctagtttctttgatatgagatgtaccttcatgatgtactctcaaagtgtcccatacctctttggcatttttacactcatcaactctttcacttt 22832189  T
Q  117 ctt 119  Q
    |||    
T  22832188 ctt 22832186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 132 - 223
Target Start/End: Original strand, 14892694 - 14892785
Alignment:
Q  132 aatacctgagctttttcatttgttgaccatgcactcttttcctttacagctccttctttggttgttgcaacaaagtctccatctttgatgat 223  Q
    ||||||||||||||||||| ||||||||||||||| ||||| || |||||||||||||||||||||| |||||||||||||| | |||||||    
T  14892694 aatacctgagctttttcatctgttgaccatgcacttttttctttgacagctccttctttggttgttggaacaaagtctccatatgtgatgat 14892785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 2 - 122
Target Start/End: Original strand, 21211747 - 21211867
Alignment:
Q  2 tttctgactgaaatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactcat 101  Q
    |||||||||  ||||||||||||||||||||||||| |||| || || |||||||||| | ||||||| || |||||  |||| |||||| |||| ||||    
T  21211747 tttctgactccaatgtcaattctagtttctttgacatgagaagtaccctcatgatgtattttcagagtatcccatactcctttagcatttgtacattcat 21211846  T
Q  102 caactctttcactttcttcca 122  Q
    |||||||||||||||||||||    
T  21211847 caactctttcactttcttcca 21211867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 122 - 222
Target Start/End: Original strand, 21211902 - 21212002
Alignment:
Q  122 agaggttagtaatacctgagctttttcatttgttgaccatgcactcttttcctttacagctccttctttggttgttgcaacaaagtctccatctttgatg 221  Q
    |||| |||||||||||||||||||||||| ||||||||||||||| ||| | || ||||||||||||||| |||||| |||||||||||||| | |||||    
T  21211902 agagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagctccttctttgtttgttggaacaaagtctccatttgtgatg 21212001  T
Q  222 a 222  Q
    |    
T  21212002 a 21212002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 2 - 122
Target Start/End: Original strand, 14892529 - 14892649
Alignment:
Q  2 tttctgactgaaatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactcat 101  Q
    |||||||||  |||||||||||| |||||||||||| ||||||| || |||||||||| | | |  || || |||||||||||  |||| ||||| ||||    
T  14892529 tttctgactccaatgtcaattctggtttctttgacatgagatgtaccctcatgatgtatttttaaggtatcccatacctctttatcattcttacattcat 14892628  T
Q  102 caactctttcactttcttcca 122  Q
    |||||||||||||||||||||    
T  14892629 caactctttcactttcttcca 14892649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 2 - 122
Target Start/End: Original strand, 7845235 - 7845355
Alignment:
Q  2 tttctgactgaaatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactcat 101  Q
    |||||||||  ||| ||||||||||||||||||||| ||||||| || ||||||| || | |||||||||| ||||||||||||||||||||||||||||    
T  7845235 tttctgactccaatatcaattctagtttctttgacatgagatgtaccctcatgatatattttcagagtgtcccatacctctttggcatttttacactcat 7845334  T
Q  102 caactctttcactttcttcca 122  Q
    |||||||||||||||||||||    
T  7845335 caactctttcactttcttcca 7845355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 520689 - 520810
Alignment:
Q  1 ctttctgactgaaatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactca 100  Q
    ||||||||||  |||||||||||| |||||||||||| ||||||| ||||||||||||||| |||  || || ||||||||||| |||||||| || |||    
T  520689 ctttctgactccaatgtcaattctggtttctttgacatgagatgtaccttcatgatgtactttcaaggtatcccatacctctttagcatttttgcattca 520788  T
Q  101 tcaactctttcactttcttcca 122  Q
    ||||||||||||||||||||||    
T  520789 tcaactctttcactttcttcca 520810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 122
Target Start/End: Complemental strand, 6693782 - 6693662
Alignment:
Q  2 tttctgactgaaatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactcat 101  Q
    |||||||||  ||||||||||||||||||||||||| ||||||| || |||||||||| | ||||||| || |||||  |||| |||||| |||| ||||    
T  6693782 tttctgactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgtattttcagagtatcccatactcctttagcatttgtacattcat 6693683  T
Q  102 caactctttcactttcttcca 122  Q
    |||||||||||||||||||||    
T  6693682 caactctttcactttcttcca 6693662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 17150926 - 17150817
Alignment:
Q  13 aatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactcatcaactctttca 112  Q
    ||||||||||||||||||||||||| ||||||| || |||||||||| | |||  || || ||||||||||| ||||| ||||| |||||||||||||||    
T  17150926 aatgtcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttagcattcttacattcatcaactctttca 17150827  T
Q  113 ctttcttcca 122  Q
    ||||||||||    
T  17150826 ctttcttcca 17150817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 6693627 - 6693527
Alignment:
Q  122 agaggttagtaatacctgagctttttcatttgttgaccatgcactcttttcctttacagctccttctttggttgttgcaacaaagtctccatctttgatg 221  Q
    |||| |||||||||||||||||||||||| ||||||||||||||| ||| | || ||||||||||||||| |||||| |||||||||||||| | |||||    
T  6693627 agagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagctccttctttgtttgttggaacaaagtctccatttgtgatg 6693528  T
Q  222 a 222  Q
    |    
T  6693527 a 6693527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 122 - 220
Target Start/End: Original strand, 7845390 - 7845488
Alignment:
Q  122 agaggttagtaatacctgagctttttcatttgttgaccatgcactcttttcctttacagctccttctttggttgttgcaacaaagtctccatctttgat 220  Q
    |||| |||||||||| ||||| ||||||| ||||||||||||  |||||||||||| ||||||||||||| |||||| |||||||||||||||| ||||    
T  7845390 agagtttagtaatacatgagccttttcatctgttgaccatgccttcttttcctttatagctccttctttgtttgttggaacaaagtctccatctgtgat 7845488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 132 - 220
Target Start/End: Complemental strand, 17150772 - 17150684
Alignment:
Q  132 aatacctgagctttttcatttgttgaccatgcactcttttcctttacagctccttctttggttgttgcaacaaagtctccatctttgat 220  Q
    ||||||||||| ||||||| ||||||||||||||||||||| || |||| |||||| |||||||||| |||||||||||||||| ||||    
T  17150772 aatacctgagcattttcatctgttgaccatgcactcttttctttgacagttccttcgttggttgttggaacaaagtctccatctgtgat 17150684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 132 - 221
Target Start/End: Complemental strand, 16254637 - 16254548
Alignment:
Q  132 aatacctgagctttttcatttgttgaccatgcactcttttcctttacagctccttctttggttgttgcaacaaagtctccatctttgatg 221  Q
    ||||| ||||||||||||| ||||||||||| |||||||||  | ||| |||||||||||||||||| |||||||||||||||| |||||    
T  16254637 aatacttgagctttttcatctgttgaccatgtactcttttctgtgacaactccttctttggttgttggaacaaagtctccatctgtgatg 16254548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 122
Target Start/End: Complemental strand, 16254797 - 16254682
Alignment:
Q  2 tttctgactgaaatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactcat 101  Q
    |||||||||  ||||||||||||||||||||||||| ||||||| || |||||||||| | |||  ||     || ||||||| ||||| ||||| ||||    
T  16254797 tttctgactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggt-----atccctctttagcattcttacattcat 16254703  T
Q  102 caactctttcactttcttcca 122  Q
    |||||||||||||||||||||    
T  16254702 caactctttcactttcttcca 16254682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 169
Target Start/End: Original strand, 520845 - 520892
Alignment:
Q  122 agaggttagtaatacctgagctttttcatttgttgaccatgcactctt 169  Q
    |||| |||| ||||||||||| ||||||| ||||||||||||||||||    
T  520845 agagtttagcaatacctgagccttttcatctgttgaccatgcactctt 520892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 13791747 - 13791782
Alignment:
Q  185 ttctttggttgttgcaacaaagtctccatctttgat 220  Q
    |||||||||||||| |||||||||||||||||||||    
T  13791747 ttctttggttgttggaacaaagtctccatctttgat 13791782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Original strand, 13791715 - 13791749
Alignment:
Q  138 tgagctttttcatttgttgaccatgcactcttttc 172  Q
    |||||||| ||||||||||||||||||||||||||    
T  13791715 tgagctttgtcatttgttgaccatgcactcttttc 13791749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: scaffold0313
Description:

Target: scaffold0313; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 7334 - 7213
Alignment:
Q  1 ctttctgactgaaatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactca 100  Q
    ||||||||||  |||||||||||| |||||||||||| ||||||| ||||||||||||||| |||  || || ||||||||||| |||||||| || |||    
T  7334 ctttctgactccaatgtcaattctggtttctttgacatgagatgtaccttcatgatgtactttcaaggtatcccatacctctttagcatttttgcattca 7235  T
Q  101 tcaactctttcactttcttcca 122  Q
    ||||||||||||||||||||||    
T  7234 tcaactctttcactttcttcca 7213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 11116 - 10995
Alignment:
Q  1 ctttctgactgaaatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactca 100  Q
    ||||||||||  |||||||||||| |||||||||||| ||||||| ||||||||||||||| |||  || || ||||||||||| |||||||| || |||    
T  11116 ctttctgactccaatgtcaattctggtttctttgacatgagatgtaccttcatgatgtactttcaaggtatcccatacctctttagcatttttgcattca 11017  T
Q  101 tcaactctttcactttcttcca 122  Q
    ||||||||||||||||||||||    
T  11016 tcaactctttcactttcttcca 10995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 169
Target Start/End: Complemental strand, 7178 - 7131
Alignment:
Q  122 agaggttagtaatacctgagctttttcatttgttgaccatgcactctt 169  Q
    |||| |||| ||||||||||| ||||||| ||||||||||||||||||    
T  7178 agagtttagcaatacctgagccttttcatctgttgaccatgcactctt 7131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 169
Target Start/End: Complemental strand, 10960 - 10913
Alignment:
Q  122 agaggttagtaatacctgagctttttcatttgttgaccatgcactctt 169  Q
    |||| |||| ||||||||||| ||||||| ||||||||||||||||||    
T  10960 agagtttagcaatacctgagccttttcatctgttgaccatgcactctt 10913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 6344 - 6465
Alignment:
Q  1 ctttctgactgaaatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactca 100  Q
    ||||||||||  |||||||||||| |||||||||||| ||||||| ||||||||||||||| |||  || || ||||||||||| |||||||| || |||    
T  6344 ctttctgactccaatgtcaattctggtttctttgacatgagatgtaccttcatgatgtactttcaaggtatcccatacctctttagcatttttgcattca 6443  T
Q  101 tcaactctttcactttcttcca 122  Q
    ||||||||||||||||||||||    
T  6444 tcaactctttcactttcttcca 6465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 169
Target Start/End: Original strand, 6500 - 6547
Alignment:
Q  122 agaggttagtaatacctgagctttttcatttgttgaccatgcactctt 169  Q
    |||| |||| ||||||||||| ||||||| ||||||||||||||||||    
T  6500 agagtttagcaatacctgagccttttcatctgttgaccatgcactctt 6547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 13284217 - 13284326
Alignment:
Q  13 aatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactcatcaactctttca 112  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||| ||| ||| || ||||||||||| ||||| || || |||||||||||||||    
T  13284217 aatgtcaattctagtttctttgacatgagatgtaccttcatgatgtactttcaaagtatcccatacctctttagcattcttgcattcatcaactctttca 13284316  T
Q  113 ctttcttcca 122  Q
    ||||||||||    
T  13284317 ctttcttcca 13284326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 2 - 122
Target Start/End: Original strand, 5389948 - 5390068
Alignment:
Q  2 tttctgactgaaatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactcat 101  Q
    |||||||||  ||||||||||||||||||||||||| ||||||| || |||||||||| | ||||||| || ||||| ||||| |||||| |||| ||||    
T  5389948 tttctgactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgtattttcagagtatcccatacttctttagcatttgtacattcat 5390047  T
Q  102 caactctttcactttcttcca 122  Q
    |||||||||||||||||||||    
T  5390048 caactctttcactttcttcca 5390068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 122 - 222
Target Start/End: Original strand, 9544172 - 9544272
Alignment:
Q  122 agaggttagtaatacctgagctttttcatttgttgaccatgcactcttttcctttacagctccttctttggttgttgcaacaaagtctccatctttgatg 221  Q
    |||| |||||||||||||||||||||||| ||||||||||||||| ||| | || |||||||||||||||||||||| |||||||||||||||| |||||    
T  9544172 agagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagctccttctttggttgttggaacaaagtctccatctgtgatg 9544271  T
Q  222 a 222  Q
    |    
T  9544272 a 9544272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 2 - 122
Target Start/End: Original strand, 16140961 - 16141081
Alignment:
Q  2 tttctgactgaaatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactcat 101  Q
    |||||||||  ||||||||||||||||||||||||| ||||||| || |||||||||| | ||||||| || ||||| ||||| |||||| |||| ||||    
T  16140961 tttctgactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgtattttcagagtatcccatacttctttagcatttgtacattcat 16141060  T
Q  102 caactctttcactttcttcca 122  Q
    |||||||||||||||||||||    
T  16141061 caactctttcactttcttcca 16141081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 122 - 222
Target Start/End: Original strand, 16141116 - 16141216
Alignment:
Q  122 agaggttagtaatacctgagctttttcatttgttgaccatgcactcttttcctttacagctccttctttggttgttgcaacaaagtctccatctttgatg 221  Q
    |||| |||||||||||||||||||||||| ||||||||||||||| ||| | || |||||||||||||||||||||| |||||||||||||||| |||||    
T  16141116 agagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagctccttctttggttgttggaacaaagtctccatctgtgatg 16141215  T
Q  222 a 222  Q
    |    
T  16141216 a 16141216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 2 - 122
Target Start/End: Complemental strand, 26305120 - 26305000
Alignment:
Q  2 tttctgactgaaatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactcat 101  Q
    |||||||||  ||||||||||||||||||||||||| ||||||| || |||||||||| | ||||||| || ||||| ||||| |||||| |||| ||||    
T  26305120 tttctgactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgtattttcagagtatcccatacttctttagcatttgtacattcat 26305021  T
Q  102 caactctttcactttcttcca 122  Q
    |||||||||||||||||||||    
T  26305020 caactctttcactttcttcca 26305000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 2 - 122
Target Start/End: Original strand, 26361698 - 26361818
Alignment:
Q  2 tttctgactgaaatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactcat 101  Q
    |||||||||  ||||||||||||||||||||||||| ||||||| || |||||||||| | ||||||| || ||||| ||||| |||||| |||| ||||    
T  26361698 tttctgactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgtattttcagagtatcccatacttctttagcatttgtacattcat 26361797  T
Q  102 caactctttcactttcttcca 122  Q
    |||||||||||||||||||||    
T  26361798 caactctttcactttcttcca 26361818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 2 - 122
Target Start/End: Complemental strand, 32099944 - 32099824
Alignment:
Q  2 tttctgactgaaatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactcat 101  Q
    |||||||||  ||||||||||||||||||||||||| ||||||| || |||||||||| | ||||||| || ||||| ||||| |||||| |||| ||||    
T  32099944 tttctgactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgtattttcagagtatcccatacttctttagcatttgtacattcat 32099845  T
Q  102 caactctttcactttcttcca 122  Q
    |||||||||||||||||||||    
T  32099844 caactctttcactttcttcca 32099824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 46498523 - 46498423
Alignment:
Q  122 agaggttagtaatacctgagctttttcatttgttgaccatgcactcttttcctttacagctccttctttggttgttgcaacaaagtctccatctttgatg 221  Q
    |||| |||||||||||||||||||||||| ||||||||||||||| ||| | || |||||||||||||||||||||| |||||||||||||||| |||||    
T  46498523 agagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagctccttctttggttgttggaacaaagtctccatctgtgatg 46498424  T
Q  222 a 222  Q
    |    
T  46498423 a 46498423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 122 - 222
Target Start/End: Original strand, 5390103 - 5390203
Alignment:
Q  122 agaggttagtaatacctgagctttttcatttgttgaccatgcactcttttcctttacagctccttctttggttgttgcaacaaagtctccatctttgatg 221  Q
    |||| |||||||||||||||||||||||| ||||||||||||||| ||| | || |||||||||||||||||||||| |||||||||||||| | |||||    
T  5390103 agagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagctccttctttggttgttggaacaaagtctccatttgtgatg 5390202  T
Q  222 a 222  Q
    |    
T  5390203 a 5390203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 122
Target Start/End: Complemental strand, 6536048 - 6535928
Alignment:
Q  2 tttctgactgaaatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactcat 101  Q
    |||||||||  ||||||||||||||||||||||||| ||||||| || |||||||||| | ||||||| || |||||  |||| |||||| |||| ||||    
T  6536048 tttctgactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgtattttcagagtatcccatactcctttagcatttgtacattcat 6535949  T
Q  102 caactctttcactttcttcca 122  Q
    |||||||||||||||||||||    
T  6535948 caactctttcactttcttcca 6535928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 122
Target Start/End: Complemental strand, 8502613 - 8502493
Alignment:
Q  2 tttctgactgaaatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactcat 101  Q
    |||||||||  ||||||||||||||||||||||||| ||||||| || |||||||||| | ||||||| || |||||  |||| |||||| |||| ||||    
T  8502613 tttctgactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgtattttcagagtatcccatactcctttagcatttgtacattcat 8502514  T
Q  102 caactctttcactttcttcca 122  Q
    |||||||||||||||||||||    
T  8502513 caactctttcactttcttcca 8502493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 122
Target Start/End: Original strand, 9544017 - 9544137
Alignment:
Q  2 tttctgactgaaatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactcat 101  Q
    |||||||||  ||||||||||||||||||||||||| ||||||| || |||||||||| | |||| || || ||||| ||||| |||||| |||| ||||    
T  9544017 tttctgactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgtattttcagggtatcccatacttctttagcatttgtacattcat 9544116  T
Q  102 caactctttcactttcttcca 122  Q
    |||||||||||||||||||||    
T  9544117 caactctttcactttcttcca 9544137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 26304965 - 26304865
Alignment:
Q  122 agaggttagtaatacctgagctttttcatttgttgaccatgcactcttttcctttacagctccttctttggttgttgcaacaaagtctccatctttgatg 221  Q
    |||| |||||||||||||||||||||||| ||||||||||||||| ||| | || |||||||||||||||||||||| |||||||||||||| | |||||    
T  26304965 agagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagctccttctttggttgttggaacaaagtctccatttgtgatg 26304866  T
Q  222 a 222  Q
    |    
T  26304865 a 26304865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 122 - 222
Target Start/End: Original strand, 26361853 - 26361953
Alignment:
Q  122 agaggttagtaatacctgagctttttcatttgttgaccatgcactcttttcctttacagctccttctttggttgttgcaacaaagtctccatctttgatg 221  Q
    |||| |||||||||||||||||||||||| ||||||||||||||| ||| | || |||||||||||||||||||||| |||||||||||||| | |||||    
T  26361853 agagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagctccttctttggttgttggaacaaagtctccatttgtgatg 26361952  T
Q  222 a 222  Q
    |    
T  26361953 a 26361953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 122
Target Start/End: Complemental strand, 44898863 - 44898743
Alignment:
Q  2 tttctgactgaaatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactcat 101  Q
    |||||||||  ||||||||||||||||||||||||| ||||||| || |||||||||| | ||||||| || |||||  |||| |||||| |||| ||||    
T  44898863 tttctgactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgtattttcagagtatcccatactcctttagcatttgtacattcat 44898764  T
Q  102 caactctttcactttcttcca 122  Q
    |||||||||||||||||||||    
T  44898763 caactctttcactttcttcca 44898743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 122
Target Start/End: Complemental strand, 46498678 - 46498558
Alignment:
Q  2 tttctgactgaaatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactcat 101  Q
    |||||||||  ||||||||||||||||||||||||| || |||| || |||||||||| | ||||||| || ||||| ||||| |||||| |||| ||||    
T  46498678 tttctgactccaatgtcaattctagtttctttgacatgaaatgtaccctcatgatgtattttcagagtatcccatacttctttagcatttgtacattcat 46498579  T
Q  102 caactctttcactttcttcca 122  Q
    |||||||||||||||||||||    
T  46498578 caactctttcactttcttcca 46498558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 8502458 - 8502358
Alignment:
Q  122 agaggttagtaatacctgagctttttcatttgttgaccatgcactcttttcctttacagctccttctttggttgttgcaacaaagtctccatctttgatg 221  Q
    |||| |||||||||||||||||||||||| ||||||||||||||| ||| | || ||||||||||||||| |||||| |||||||||||||| | |||||    
T  8502458 agagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagctccttctttgtttgttggaacaaagtctccatttgtgatg 8502359  T
Q  222 a 222  Q
    |    
T  8502358 a 8502358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 44898708 - 44898608
Alignment:
Q  122 agaggttagtaatacctgagctttttcatttgttgaccatgcactcttttcctttacagctccttctttggttgttgcaacaaagtctccatctttgatg 221  Q
    |||| |||||||||||||||||||||||| ||||||||||||||| ||| | || ||||||||||||||| |||||| |||||||||||||| | |||||    
T  44898708 agagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagctccttctttgtttgttggaacaaagtctccatttgtgatg 44898609  T
Q  222 a 222  Q
    |    
T  44898608 a 44898608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 6535893 - 6535793
Alignment:
Q  122 agaggttagtaatacctgagctttttcatttgttgaccatgcactcttttcctttacagctccttctttggttgttgcaacaaagtctccatctttgatg 221  Q
    |||| |||||||||||||||||||||||| || |||||||||||| ||| | || ||||||||||||||| |||||| |||||||||||||| | |||||    
T  6535893 agagtttagtaatacctgagctttttcatctgctgaccatgcactttttgctttgacagctccttctttgtttgttggaacaaagtctccatttgtgatg 6535794  T
Q  222 a 222  Q
    |    
T  6535793 a 6535793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 32099789 - 32099689
Alignment:
Q  122 agaggttagtaatacctgagctttttcatttgttgaccatgcactcttttcctttacagctccttctttggttgttgcaacaaagtctccatctttgatg 221  Q
    |||| ||| |||||||||||||||||||| ||||||||||||||| ||| | || |||||||||||||||||||||| |||||| ||||||| | |||||    
T  32099789 agagtttaataatacctgagctttttcatctgttgaccatgcactttttgctttgacagctccttctttggttgttggaacaaaatctccatttgtgatg 32099690  T
Q  222 a 222  Q
    |    
T  32099689 a 32099689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 132 - 220
Target Start/End: Complemental strand, 42596786 - 42596698
Alignment:
Q  132 aatacctgagctttttcatttgttgaccatgcactcttttcctttacagctccttctttggttgttgcaacaaagtctccatctttgat 220  Q
    ||||||||||||||||||| ||||||||||||||||||||| || |  | ||||| ||||||  ||| |||||||||||||||| ||||    
T  42596786 aatacctgagctttttcatctgttgaccatgcactcttttctttgatggttccttttttggtctttggaacaaagtctccatctgtgat 42596698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 42596923 - 42596861
Alignment:
Q  1 ctttctgactgaaatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactct 63  Q
    ||||||||||  |||||||||| |||||||||||||| ||||||| |||||||||||||||||    
T  42596923 ctttctgactctaatgtcaattatagtttctttgacatgagatgtaccttcatgatgtactct 42596861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 20949420 - 20949299
Alignment:
Q  1 ctttctgactgaaatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactca 100  Q
    ||||||||||  |||||||||||| |||||||||||| ||||||| ||||||||||||||| |||  || || ||||||||||| |||||||| || |||    
T  20949420 ctttctgactccaatgtcaattctggtttctttgacatgagatgtaccttcatgatgtactttcaaggtatcccatacctctttagcatttttgcattca 20949321  T
Q  101 tcaactctttcactttcttcca 122  Q
    ||||||||||||||||||||||    
T  20949320 tcaactctttcactttcttcca 20949299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 18362686 - 18362586
Alignment:
Q  122 agaggttagtaatacctgagctttttcatttgttgaccatgcactcttttcctttacagctccttctttggttgttgcaacaaagtctccatctttgatg 221  Q
    |||| |||||||||||||||||||||||| ||||||||||||||| ||| | || |||||||||||||||||||||| |||||||||||||||| |||||    
T  18362686 agagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagctccttctttggttgttggaacaaagtctccatctgtgatg 18362587  T
Q  222 a 222  Q
    |    
T  18362586 a 18362586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 2 - 122
Target Start/End: Complemental strand, 18362841 - 18362721
Alignment:
Q  2 tttctgactgaaatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactcat 101  Q
    |||||||||  ||||||||||||||||||||||||| ||||||| || |||||||||| | ||||||| || ||||| ||||| |||||| |||| ||||    
T  18362841 tttctgactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgtattttcagagtatcccatacttctttagcatttgtacattcat 18362742  T
Q  102 caactctttcactttcttcca 122  Q
    |||||||||||||||||||||    
T  18362741 caactctttcactttcttcca 18362721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 2 - 122
Target Start/End: Original strand, 26201102 - 26201222
Alignment:
Q  2 tttctgactgaaatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactcat 101  Q
    |||||||||  ||||||||||||||||||||||||| ||||||| || |||||||||| | ||||||| || ||||| ||||| |||||| |||| ||||    
T  26201102 tttctgactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgtattttcagagtatcccatacttctttagcatttgtacattcat 26201201  T
Q  102 caactctttcactttcttcca 122  Q
    |||||||||||||||||||||    
T  26201202 caactctttcactttcttcca 26201222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 27413701 - 27413592
Alignment:
Q  13 aatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactcatcaactctttca 112  Q
    ||||||||||||||||||||||||| ||||||| || |||||||||| | ||||||| || ||||| ||||| |||||| |||| |||||||||||||||    
T  27413701 aatgtcaattctagtttctttgacatgagatgtaccctcatgatgtattttcagagtatcccatacttctttagcatttgtacattcatcaactctttca 27413602  T
Q  113 ctttcttcca 122  Q
    ||||||||||    
T  27413601 ctttcttcca 27413592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 122 - 222
Target Start/End: Original strand, 26201257 - 26201357
Alignment:
Q  122 agaggttagtaatacctgagctttttcatttgttgaccatgcactcttttcctttacagctccttctttggttgttgcaacaaagtctccatctttgatg 221  Q
    |||| |||||||||||||||||||||||| ||||||||||||||| ||| | || |||||||||||||||||||||| |||||||||||||| | |||||    
T  26201257 agagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagctccttctttggttgttggaacaaagtctccatttgtgatg 26201356  T
Q  222 a 222  Q
    |    
T  26201357 a 26201357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 122
Target Start/End: Complemental strand, 33940884 - 33940764
Alignment:
Q  2 tttctgactgaaatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactcat 101  Q
    |||||||||  ||||||||||||||||||||||||| ||||||| || |||||||||| | ||||||| || |||||  |||| |||||| |||| ||||    
T  33940884 tttctgactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgtattttcagagtatcccatactcctttagcatttgtacattcat 33940785  T
Q  102 caactctttcactttcttcca 122  Q
    |||||||||||||||||||||    
T  33940784 caactctttcactttcttcca 33940764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 127 - 222
Target Start/End: Complemental strand, 27413552 - 27413457
Alignment:
Q  127 ttagtaatacctgagctttttcatttgttgaccatgcactcttttcctttacagctccttctttggttgttgcaacaaagtctccatctttgatga 222  Q
    |||||||||||||| ||||||||| ||||||||||||||| ||| | || |||||||||||||||||||||| |||||||||||||||| ||||||    
T  27413552 ttagtaatacctgacctttttcatctgttgaccatgcactttttgctttgacagctccttctttggttgttggaacaaagtctccatctgtgatga 27413457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 33940729 - 33940629
Alignment:
Q  122 agaggttagtaatacctgagctttttcatttgttgaccatgcactcttttcctttacagctccttctttggttgttgcaacaaagtctccatctttgatg 221  Q
    |||| |||||||||||||||||||||||| ||||||||||||||| ||| | || ||||||||||||||| |||||| |||||||||||||| | |||||    
T  33940729 agagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagctccttctttgtttgttggaacaaagtctccatttgtgatg 33940630  T
Q  222 a 222  Q
    |    
T  33940629 a 33940629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 147 - 220
Target Start/End: Complemental strand, 19781947 - 19781874
Alignment:
Q  147 tcatttgttgaccatgcactcttttcctttacagctccttctttggttgttgcaacaaagtctccatctttgat 220  Q
    |||| ||| ||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||| ||||    
T  19781947 tcatctgtggaccatgcactattttcctttacaactccttctttggttgttggaacaaagtctccatctgtgat 19781874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 5601731 - 5601622
Alignment:
Q  13 aatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactcatcaactctttca 112  Q
    |||||||||||| |||||||| ||| |   ||| ||||||||||| ||| | ||||| || || |||| ||| ||| | | ||| |||||||||||||||    
T  5601731 aatgtcaattcttgtttctttaacatggcttgttccttcatgatggactttgagagtatcccacaccttttttgcagtatcacattcatcaactctttca 5601632  T
Q  113 ctttcttcca 122  Q
    ||||||||||    
T  5601631 ctttcttcca 5601622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 23375673 - 23375794
Alignment:
Q  1 ctttctgactgaaatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactca 100  Q
    ||||||||||   |||| |||||| ||||| |||||| |||| || ||||||||  ||||||| | | | || ||||||||||| ||||| || || | |    
T  23375673 ctttctgactcctatgttaattctggtttccttgacatgagaggtaccttcatggcgtactcttaaaatttcccatacctctttagcattcttgcattta 23375772  T
Q  101 tcaactctttcactttcttcca 122  Q
    |||||||||||| |||||||||    
T  23375773 tcaactctttcattttcttcca 23375794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 169
Target Start/End: Complemental strand, 20949264 - 20949217
Alignment:
Q  122 agaggttagtaatacctgagctttttcatttgttgaccatgcactctt 169  Q
    |||| |||| ||||||||||| ||||||| ||||||||||||||||||    
T  20949264 agagtttagcaatacctgagccttttcatctgttgaccatgcactctt 20949217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 1987965 - 1988086
Alignment:
Q  1 ctttctgactgaaatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactca 100  Q
    ||||||||||  |||||||||||| |||||||||||| ||||||| ||||||||||||||| |||  || || ||||||||||| |||||||| || |||    
T  1987965 ctttctgactccaatgtcaattctggtttctttgacatgagatgtaccttcatgatgtactttcaaggtatcccatacctctttagcatttttgcattca 1988064  T
Q  101 tcaactctttcactttcttcca 122  Q
    ||||||||||||||||||||||    
T  1988065 tcaactctttcactttcttcca 1988086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 16156292 - 16156192
Alignment:
Q  122 agaggttagtaatacctgagctttttcatttgttgaccatgcactcttttcctttacagctccttctttggttgttgcaacaaagtctccatctttgatg 221  Q
    |||| |||||||||||||||||||||||| ||||||||||||||| ||| | || |||||||||||||||||||||| |||||||||||||||| |||||    
T  16156292 agagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagctccttctttggttgttggaacaaagtctccatctgtgatg 16156193  T
Q  222 a 222  Q
    |    
T  16156192 a 16156192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 2 - 122
Target Start/End: Complemental strand, 16156447 - 16156327
Alignment:
Q  2 tttctgactgaaatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactcat 101  Q
    |||||||||  ||||||||||||||||||||||||| ||||||| || |||||||||| | ||||||| || ||||| ||||| |||||| |||| ||||    
T  16156447 tttctgactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgtattttcagagtatcccatacttctttagcatttgtacattcat 16156348  T
Q  102 caactctttcactttcttcca 122  Q
    |||||||||||||||||||||    
T  16156347 caactctttcactttcttcca 16156327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 22959893 - 22959772
Alignment:
Q  1 ctttctgactgaaatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactca 100  Q
    ||||||||||  |||||||||||| ||||||| |||| |||  || ||||||||||||||| | | |||||| || || |||||||||||| |||| |||    
T  22959893 ctttctgactccaatgtcaattcttgtttcttcgacatgagtggttccttcatgatgtacttttaaagtgtcccacacttctttggcatttgtacattca 22959794  T
Q  101 tcaactctttcactttcttcca 122  Q
    ||||| ||||||||||||||||    
T  22959793 tcaaccctttcactttcttcca 22959772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 220
Target Start/End: Original strand, 1988121 - 1988219
Alignment:
Q  122 agaggttagtaatacctgagctttttcatttgttgaccatgcactcttttcctttacagctccttctttggttgttgcaacaaagtctccatctttgat 220  Q
    |||| |||| ||||||||||| ||||||| ||||||||||||||||||  | || |    |||||||||||||  || |||||||||||||||| ||||    
T  1988121 agagtttagcaatacctgagccttttcatctgttgaccatgcactcttaactttgatgattccttctttggttaatggaacaaagtctccatctgtgat 1988219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 2 - 122
Target Start/End: Complemental strand, 6423871 - 6423751
Alignment:
Q  2 tttctgactgaaatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactcat 101  Q
    |||||||||  ||||||||||||||||||||||||| ||||||| || |||||||||| | ||||||| || ||||| ||||| |||||| |||| ||||    
T  6423871 tttctgactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgtattttcagagtatcccatacttctttagcatttgtacattcat 6423772  T
Q  102 caactctttcactttcttcca 122  Q
    |||||||||||||||||||||    
T  6423771 caactctttcactttcttcca 6423751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 8974255 - 8974155
Alignment:
Q  122 agaggttagtaatacctgagctttttcatttgttgaccatgcactcttttcctttacagctccttctttggttgttgcaacaaagtctccatctttgatg 221  Q
    |||| |||||||||||||||||||||||| ||||||||||||||| ||| | || |||||||||||||||||||||| |||||||||||||||| |||||    
T  8974255 agagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagctccttctttggttgttggaacaaagtctccatctgtgatg 8974156  T
Q  222 a 222  Q
    |    
T  8974155 a 8974155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 2 - 122
Target Start/End: Complemental strand, 8974410 - 8974290
Alignment:
Q  2 tttctgactgaaatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactcat 101  Q
    |||||||||  ||||||||||||||||||||||||| ||||||| || |||||||||| | ||||||| || ||||| ||||| |||||| |||| ||||    
T  8974410 tttctgactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgtattttcagagtatcccatacttctttagcatttgtacattcat 8974311  T
Q  102 caactctttcactttcttcca 122  Q
    |||||||||||||||||||||    
T  8974310 caactctttcactttcttcca 8974290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 6423716 - 6423616
Alignment:
Q  122 agaggttagtaatacctgagctttttcatttgttgaccatgcactcttttcctttacagctccttctttggttgttgcaacaaagtctccatctttgatg 221  Q
    |||| |||||||||||||||||||||||| ||||||||||||| | ||| | || |||||||||||||||||||||| |||||||||||||||| |||||    
T  6423716 agagtttagtaatacctgagctttttcatctgttgaccatgcattttttgctttgacagctccttctttggttgttggaacaaagtctccatctgtgatg 6423617  T
Q  222 a 222  Q
    |    
T  6423616 a 6423616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 9538544 - 9538444
Alignment:
Q  122 agaggttagtaatacctgagctttttcatttgttgaccatgcactcttttcctttacagctccttctttggttgttgcaacaaagtctccatctttgatg 221  Q
    |||| |||||||||||||||||||||||| ||||||||||||||| ||| | || |||||||||||||||||||||| |||||||||||||| | |||||    
T  9538544 agagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagctccttctttggttgttggaacaaagtctccatttgtgatg 9538445  T
Q  222 a 222  Q
    |    
T  9538444 a 9538444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 122
Target Start/End: Complemental strand, 9538699 - 9538579
Alignment:
Q  2 tttctgactgaaatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactcat 101  Q
    |||||||||  ||||||||||||||||||||||||| ||||||| || |||||||||| | ||||||| || ||||| | ||| |||||| |||| ||||    
T  9538699 tttctgactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgtattttcagagtatcccatacttgtttagcatttgtacattcat 9538600  T
Q  102 caactctttcactttcttcca 122  Q
    |||||||||||||||||||||    
T  9538599 caactctttcactttcttcca 9538579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 12387397 - 12387297
Alignment:
Q  122 agaggttagtaatacctgagctttttcatttgttgaccatgcactcttttcctttacagctccttctttggttgttgcaacaaagtctccatctttgatg 221  Q
    |||| ||| |||||| ||||||||||||||||||||||||||||| ||||| || |||| ||||||||||||| ||| |||||||||||||||| |||||    
T  12387397 agagtttattaatacttgagctttttcatttgttgaccatgcacttttttctttgacagttccttctttggtttttggaacaaagtctccatctgtgatg 12387298  T
Q  222 a 222  Q
    |    
T  12387297 a 12387297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 12387540 - 12387432
Alignment:
Q  13 aatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactcatcaactctttca 112  Q
    ||||||||||||||||||||||||| |||||||  |||||||||||||| |||  || || ||||||||||| ||||| ||| | |||| ||||||||||    
T  12387540 aatgtcaattctagtttctttgacatgagatgtaacttcatgatgtactatcaaggtatcccatacctcttt-gcattcttaaattcataaactctttca 12387442  T
Q  113 ctttcttcca 122  Q
     |||||||||    
T  12387441 gtttcttcca 12387432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 48979825 - 48979716
Alignment:
Q  13 aatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactcatcaactctttca 112  Q
    |||||||||||| |||||||| ||| |   ||| ||||||||||| ||| | ||||| || || |||| ||| ||| | | ||| |||||||||||||||    
T  48979825 aatgtcaattcttgtttctttaacatggcttgttccttcatgatggactttgagagtatcccacaccttttttgcagtatcacattcatcaactctttca 48979726  T
Q  113 ctttcttcca 122  Q
    ||||||||||    
T  48979725 ctttcttcca 48979716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 132 - 222
Target Start/End: Original strand, 53472 - 53562
Alignment:
Q  132 aatacctgagctttttcatttgttgaccatgcactcttttcctttacagctccttctttggttgttgcaacaaagtctccatctttgatga 222  Q
    ||||||||||||||||||| | ||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||| ||||||    
T  53472 aatacctgagctttttcatctattgaccatgcactcttttctttgacagctccttctttggttgttggaacaaagtctccatctgtgatga 53562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 2 - 122
Target Start/End: Original strand, 53307 - 53427
Alignment:
Q  2 tttctgactgaaatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactcat 101  Q
    |||||||||  ||||||||||||||||||||||||| ||||||| || |||||||||| | | |  || || ||||||||||| ||||| ||||| ||||    
T  53307 tttctgactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgtatttttaaggtatcccatacctctttagcattcttacattcat 53406  T
Q  102 caactctttcactttcttcca 122  Q
    |||||||||||||||||||||    
T  53407 caactctttcactttcttcca 53427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 27168762 - 27168883
Alignment:
Q  1 ctttctgactgaaatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactca 100  Q
    ||||||||||  |||||||||||| || ||||||||| ||||||| ||||||||||||||| |||  || || ||||||||||| |||||||| || |||    
T  27168762 ctttctgactccaatgtcaattctggtctctttgacatgagatgtaccttcatgatgtactttcaaggtatcccatacctctttagcatttttgcattca 27168861  T
Q  101 tcaactctttcactttcttcca 122  Q
    ||||||||||||||||||||||    
T  27168862 tcaactctttcactttcttcca 27168883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 122
Target Start/End: Original strand, 9512541 - 9512661
Alignment:
Q  2 tttctgactgaaatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactcat 101  Q
    |||||||||  ||||||||||||||||||| ||||| ||||||| || |||||||||| | ||||||| || |||||  |||| |||||| |||||||||    
T  9512541 tttctgactccaatgtcaattctagtttctctgacatgagatgtaccctcatgatgtattttcagagtatcccatactcctttagcatttgtacactcat 9512640  T
Q  102 caactctttcactttcttcca 122  Q
    |||||||||||||||||||||    
T  9512641 caactctttcactttcttcca 9512661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 122
Target Start/End: Complemental strand, 18652782 - 18652662
Alignment:
Q  2 tttctgactgaaatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactcat 101  Q
    |||||||||  ||||||||||||||||||||||||| ||||||| || |||||||||| | ||||||| || |||||  |||| |||||| |||| ||||    
T  18652782 tttctgactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgtattttcagagtatcccatactcctttagcatttgtacattcat 18652683  T
Q  102 caactctttcactttcttcca 122  Q
    |||||||||||||||||||||    
T  18652682 caactctttcactttcttcca 18652662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 122
Target Start/End: Complemental strand, 45015917 - 45015797
Alignment:
Q  2 tttctgactgaaatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactcat 101  Q
    |||||||||  ||||||||||||||||||||||||| ||||||| || |||||||||| | |||  || || ||||||||||| |||||| |||| ||||    
T  45015917 tttctgactccaatgtcaattctagtttctttgacatgagatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatttgtacattcat 45015818  T
Q  102 caactctttcactttcttcca 122  Q
    |||||||||||||||||||||    
T  45015817 caactctttcactttcttcca 45015797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 122 - 222
Target Start/End: Original strand, 9512696 - 9512796
Alignment:
Q  122 agaggttagtaatacctgagctttttcatttgttgaccatgcactcttttcctttacagctccttctttggttgttgcaacaaagtctccatctttgatg 221  Q
    |||| |||||||||||||||||||||||| ||||||||||||||| ||| | || ||||||||||||||| |||||| |||||||||||||| | |||||    
T  9512696 agagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagctccttctttgtttgttggaacaaagtctccatttgtgatg 9512795  T
Q  222 a 222  Q
    |    
T  9512796 a 9512796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 18652627 - 18652527
Alignment:
Q  122 agaggttagtaatacctgagctttttcatttgttgaccatgcactcttttcctttacagctccttctttggttgttgcaacaaagtctccatctttgatg 221  Q
    |||| |||||||||||||||||||||||| ||||||||||||||| ||| | || ||||||||||||||| |||||| |||||||||||||| | |||||    
T  18652627 agagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagctccttctttgtttgttggaacaaagtctccatttgtgatg 18652528  T
Q  222 a 222  Q
    |    
T  18652527 a 18652527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 128 - 215
Target Start/End: Complemental strand, 45015756 - 45015669
Alignment:
Q  128 tagtaatacctgagctttttcatttgttgaccatgcactcttttcctttacagctccttctttggttgttgcaacaaagtctccatct 215  Q
    ||||||||||||||||||||||| ||||||||||||||| ||| | || |||||||||||||||||||||| |||||| ||| |||||    
T  45015756 tagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagctccttctttggttgttggaacaaaatcttcatct 45015669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 22903692 - 22903583
Alignment:
Q  13 aatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactcatcaactctttca 112  Q
    ||||||||||||||||||||||||| ||||||| || |||||||||| | ||| | | || ||||| ||||| |||||  |||| |||||||||||||||    
T  22903692 aatgtcaattctagtttctttgacatgagatgtaccatcatgatgtaatatcaaaatatcccatacatctttagcattaatacattcatcaactctttca 22903593  T
Q  113 ctttcttcca 122  Q
    ||||||||||    
T  22903592 ctttcttcca 22903583  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 1792107 - 1791998
Alignment:
Q  13 aatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactcatcaactctttca 112  Q
    |||||||||||| |||||||| ||| |   ||| ||||||||||| ||| | ||||| || || |||| ||| ||| | | ||| |||||||||||||||    
T  1792107 aatgtcaattcttgtttctttaacatggcttgttccttcatgatggactttgagagtatcccacaccttttttgcagtatcacattcatcaactctttca 1792008  T
Q  113 ctttcttcca 122  Q
    ||||||||||    
T  1792007 ctttcttcca 1791998  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 22903538 - 22903498
Alignment:
Q  132 aatacctgagctttttcatttgttgaccatgcactcttttc 172  Q
    |||||||||| |||||||| |||||||||||||||||||||    
T  22903538 aatacctgagttttttcatctgttgaccatgcactcttttc 22903498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 169
Target Start/End: Original strand, 27168918 - 27168965
Alignment:
Q  122 agaggttagtaatacctgagctttttcatttgttgaccatgcactctt 169  Q
    |||| |||| ||||||||||| ||||||| ||||||||||||||||||    
T  27168918 agagtttagcaatacctgagccttttcatctgttgaccatgcactctt 27168965  T

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Target: scaffold0015 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 189302 - 189431
Alignment:
Q  1 ctttctgactgaaatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactca 100  Q
    ||||||||||  |||||||||||| ||||||| |||| |||| || ||||||||||||||| | | |||||| || || |||||||||||| |||| |||    
T  189302 ctttctgactccaatgtcaattcttgtttcttcgacatgagaggttccttcatgatgtacttttaaagtgtcccacacttctttggcatttgtacattca 189401  T
Q  101 tcaactctttcactttcttccagaggttagt 131  Q
    ||||| |||||| ||||||||| ||||||||    
T  189402 tcaaccctttcaatttcttcca-aggttagt 189431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0529 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0529
Description:

Target: scaffold0529; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 78 - 1
Alignment:
Q  13 aatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatt 90  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||| ||| ||| || ||||||||||| |||||    
T  78 aatgtcaattctagtttctttgacatgagatgtaccttcatgatgtactttcaaagtatcccatacctctttagcatt 1  T

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Target: scaffold0016 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 16792 - 16671
Alignment:
Q  1 ctttctgactgaaatgtcaattctagtttctttgacaagagatgtcccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactca 100  Q
    ||||||||||   |||| |||||| ||||| |||||| |||| || ||||||||  ||||||| | | | || ||||||||||| ||||| || || | |    
T  16792 ctttctgactcctatgttaattctggtttccttgacatgagaggtaccttcatggcgtactcttaaaatttcccatacctctttagcattcttgcattta 16693  T
Q  101 tcaactctttcactttcttcca 122  Q
    |||||||||||| |||||||||    
T  16692 tcaactctttcattttcttcca 16671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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