View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0342_low_3 (Length: 454)
Name: NF0342_low_3
Description: NF0342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0342_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 7381280 - 7380923
Alignment:
| Q |
1 |
atctcacaactttatgtccttcttcagaattcataaaacaccctttggcaatcaaacttggtgtccaaagcatgtaccccataaccataagccacaagcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7381280 |
atctcacaactttatgtccttcttcagaattcataaaacaccctttggcaattaaacttggtgtccaaagcatgtaccccataaccataagccacaagcc |
7381181 |
T |
|
| Q |
101 |
ttgaaaaaatatacttaatgatctcacaaaactaaccaagaagcttttttgcatgggaattcccaaaagggtagttgaaagagagacaaagacaagaact |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7381180 |
ttgaaaaaatatacttaatgatcttacaaaactaaccaagaagcttttttgcatgggaattcccaaaagggtagttgaaagagagacaaagacaagaact |
7381081 |
T |
|
| Q |
201 |
tgtaagagaagatggtattgtccttctggtcccatgtgatcagctgaatgaagatggaagagaagaagctgttgnnnnnnngccatagaagctaggaatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7381080 |
tgtaagagaagatggtattgtccttctggtcccatgtgatcagctgaatgaagatggaagagaagaagctgttgaaaaaaagccatagaagctaggaatt |
7380981 |
T |
|
| Q |
301 |
gtgttagggcaagttttgcttggttttcgattttgtcaaggattatggaggatgcggc |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7380980 |
gtgttagggcaagttttgcttggttttcgattttgtcaaggattatggaggatgcggc |
7380923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University