View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0342_low_7 (Length: 393)
Name: NF0342_low_7
Description: NF0342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0342_low_7 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: scaffold0252 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 20775 - 21048
Alignment:
| Q |
1 |
gcattatttcagggtctgattgggatgataaggttgagaatgaactggagaaggttaaaattcagctttcggataatttcgtgattagggtcatgaaaga |
100 |
Q |
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|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
20775 |
gcattacttaagggtctgattgggatgataaggttgagaatgaactggagaaggttaaaattc---tttcggataatttcgtgattagggtcatgaaaga |
20871 |
T |
|
| Q |
101 |
gcttcgagatggtcctttaaaggcttataagttttttcattgggttgggaagcaatctagttatcaacggaatacagttacttataatgcagttgctaga |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20872 |
gcttcgagatagtcctttaaaggcttataagttttttcattgggttggaaagaaatctagttatcaacggaatacagttacttataatgcagttgctaga |
20971 |
T |
|
| Q |
201 |
gttcttcctagagtggagtcaattgaagagttttggagtattcttgaggagatgaagagtgtcggtcatgaattgga |
277 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
20972 |
gttcttcctagagtggagtcaattgaagagttttggagtattcttgaggagacgaagagtgtctgtcatgaattgga |
21048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 43435292 - 43435572
Alignment:
| Q |
1 |
gcattatttcagggtctgattgggatgataaggttgagaatgaactggagaaggttaaaattcagctttcggataatttcgtgattagggtcatgaaaga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
43435292 |
gcattatttcagggtctgattgggatgataaggttgagaatgaactggagaaggttaaaattcagctttcggataatttcgtgattagggttatgaaaga |
43435391 |
T |
|
| Q |
101 |
gcttcgagatggtcctttaaaggcttataagttttttcattgggttgggaagcaatctagttatcaacggaatacagttacttataatgcagttgctaga |
200 |
Q |
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|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
43435392 |
gcttcgagatagtcccttaaaggcttataagttttttcattgggttgggaagcaatctggttatcaacagaatacagtgacttataatgcagttgctaga |
43435491 |
T |
|
| Q |
201 |
gttcttcctagagtggagtcaattgaagagttttggagtattcttgaggagatgaagagtgtcggtcatgaattggatctt |
281 |
Q |
| |
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|||||||| || |||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
43435492 |
gttcttccaaggatggaatcaattgaggagttttggagtattattgaggagatgaagagtgtcggtcatgaattggatctt |
43435572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 3 - 282
Target Start/End: Original strand, 43426789 - 43427068
Alignment:
| Q |
3 |
attatttcagggtctgattgggatgataaggttgagaatgaactggagaaggttaaaattcagctttcggataatttcgtgattagggtcatgaaagagc |
102 |
Q |
| |
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||||||||||||||||||||||| || || ||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| |||||||||| |
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| T |
43426789 |
attatttcagggtctgattgggacaatgagattgagaatgaactcgagaaggttaaaattcaactttcggacaatttcgtgattagggttatgaaagagc |
43426888 |
T |
|
| Q |
103 |
ttcgagatggtcctttaaaggcttataagttttttcattgggttgggaagcaatctagttatcaacggaatacagttacttataatgcagttgctagagt |
202 |
Q |
| |
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||||| || ||||||||||||||||||||||||||||||||||||| ||||||||| |||||| || ||||||||| ||||||||||||||||||||||| |
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| T |
43426889 |
ttcgaaatagtcctttaaaggcttataagttttttcattgggttggaaagcaatctggttatctacagaatacagtgacttataatgcagttgctagagt |
43426988 |
T |
|
| Q |
203 |
tcttcctagagtggagtcaattgaagagttttggagtattcttgaggagatgaagagtgtcggtcatgaattggatcttg |
282 |
Q |
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|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43426989 |
tcttcctagaatggagtcaattgagaagttttggagtattcttgaggagatgaagagtgtcggtcatgaattggatcttg |
43427068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 73 - 281
Target Start/End: Original strand, 43443558 - 43443766
Alignment:
| Q |
73 |
ataatttcgtgattagggtcatgaaagagcttcgagatggtcctttaaaggcttataagttttttcattgggttgggaagcaatctagttatcaacggaa |
172 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
43443558 |
ataatttcgtgattagggttatgaaagagcttcgagatagtcccttaaaggcttataagttttttcattgggttgggaagcaatctggttatcaacagaa |
43443657 |
T |
|
| Q |
173 |
tacagttacttataatgcagttgctagagttcttcctagagtggagtcaattgaagagttttggagtattcttgaggagatgaagagtgtcggtcatgaa |
272 |
Q |
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|||||| ||||||||||||||||||||||||||||| || |||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
43443658 |
tacagtgacttataatgcagttgctagagttcttccaaggatggaatcaattgaggagttttggagtattattgaggagatgaagagtgtcggtcatgaa |
43443757 |
T |
|
| Q |
273 |
ttggatctt |
281 |
Q |
| |
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||||||||| |
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| T |
43443758 |
ttggatctt |
43443766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 6 - 262
Target Start/End: Original strand, 43422214 - 43422470
Alignment:
| Q |
6 |
atttcagggtctgattgggatgataaggttgagaatgaactggagaaggttaaaattcagctttcggataatttcgtgattagggtcatgaaagagcttc |
105 |
Q |
| |
|
|||| ||| ||||| |||| |||| |||||| |||||| || | || |||| ||||| ||||||||| ||| ||||| |||| |||||||||||| |
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| T |
43422214 |
attttaggatctgagtggggtgatgaggttgtgaatgagcttgtagagcttaagattcaattttcggatagttttgtgatacgggttttgaaagagcttc |
43422313 |
T |
|
| Q |
106 |
gagatggtcctttaaaggcttataagttttttcattgggttgggaagcaatctagttatcaacggaatacagttacttataatgcagttgctagagttct |
205 |
Q |
| |
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|| | |||||||||||| ||| || |||||| |||||||||||||||||||| ||||||||| ||| | || ||||| |||||||||||||||||||| |
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| T |
43422314 |
gaagttgtcctttaaagggttacaactttttttattgggttgggaagcaatctggttatcaacataatgctgtgacttacaatgcagttgctagagttct |
43422413 |
T |
|
| Q |
206 |
tcctagagtggagtcaattgaagagttttggagtattcttgaggagatgaagagtgt |
262 |
Q |
| |
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| |||| |||| |||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
43422414 |
tgctaggatggattcaattgaggagttttggagtattcttgcggagatgaagagtgt |
43422470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 24 - 280
Target Start/End: Complemental strand, 40186487 - 40186231
Alignment:
| Q |
24 |
gatgataaggttgagaatgaactggagaaggttaaaattcagc---tttcggataatttcgtgattagggtcatgaaagagcttcgagatggtcctttaa |
120 |
Q |
| |
|
|||||||||||||||||| |||| | || |||| |||||| | || | ||| |||| ||||| ||||| || ||| ||||| | || ||||||||| |
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| T |
40186487 |
gatgataaggttgagaatcaacttgcaaatgttagaattcaacaacttactgatgattttgtgataagggttttggaagggcttcaaaatcgtcctttaa |
40186388 |
T |
|
| Q |
121 |
aggcttataagttttttcattgggttgggaagcaatctagttatcaacggaatacagttacttataatgcagttgctagagttcttcctagagtggagtc |
220 |
Q |
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||||||| |||||||||||||||||||||||||||||| ||||||||| ||||| || ||||| ||| ||||| ||||||||| ||| |||| || |
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| T |
40186387 |
aggcttacaagttttttcattgggttgggaagcaatctggttatcaacataataccgtgacttacaattatgttgcaagagttcttgctaagatggactc |
40186288 |
T |
|
| Q |
221 |
aattgaagagttttggagtattcttgaggagatgaagagtgtcggtcatgaattggatct |
280 |
Q |
| |
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|||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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|
| T |
40186287 |
aattgaggagttttggagta---tcgaggagatgaagagtgtcggtcatgaattggatct |
40186231 |
T |
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