View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0342_low_8 (Length: 390)
Name: NF0342_low_8
Description: NF0342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0342_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 23 - 382
Target Start/End: Complemental strand, 46806148 - 46805789
Alignment:
| Q |
23 |
catcatcaccttcttgctttaactttgattccatataaacagttaatttagctttcaaatcaagcagcaaaccagaggctgcttccagtttagatttgag |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46806148 |
catcatcaccttcttgctttaactttgattccatataaacagttaatttagctttcaaatcaagcagcaaaccagaggctgcttccagtttagatttgag |
46806049 |
T |
|
| Q |
123 |
atcctttgcagacaacatttgctcattgattctctggagctcttcttctgcctgtttaagttccttctcccaattgagtgaatcttgatctcttgccatg |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46806048 |
atcctttgcagacaacatttgctcattgattctctggagctcttcttctgcctgtttaagttccttctcccaattgagtgaatcttgatctcttgccatg |
46805949 |
T |
|
| Q |
223 |
actgttcctattctttgttcctctgcttccaagtgtgcagcatgagcagtctctaatgactcttttgtggctattagttcaatagttaaatcttccactg |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46805948 |
actgttcctattctttgttcctctgcttccaagtgtgcagcatgagcagtctctaatgactcttttgtggctattagttcaatagttaaatcttccactg |
46805849 |
T |
|
| Q |
323 |
acttctctacttccttggatgctgtaactgcctcctcggctttcttaatagcttcatctc |
382 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46805848 |
acttctctacttccttggatgctgtaactgcctcctcggctttcttaatagcttcatctc |
46805789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 23 - 377
Target Start/End: Original strand, 5888734 - 5889088
Alignment:
| Q |
23 |
catcatcaccttcttgctttaactttgattccatataaacagttaatttagctttcaaatcaagcagcaaaccagaggctgcttcca-gtttagatttga |
121 |
Q |
| |
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||||||| |||||||| ||| |||||||||||||||| || |||| | ||||||||||||||| ||||| |||| ||| | | | |||||||||| | |
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| T |
5888734 |
catcatctccttcttggtttgactttgattccatataggcatttaactcagctttcaaatcaagaagcaacgcagaagctt-tactatgtttagatttaa |
5888832 |
T |
|
| Q |
122 |
gatcctttgcagacaacatttgctcattgattctctggagctcttcttctgcctgtttaagttccttctcccaattgagtgaatcttgatctcttgccat |
221 |
Q |
| |
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||||| | ||| |||| |||| | ||||| | | | || |||| |||| | ||||| |||||| ||||||||||||| |||||||||||||||||||| |
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| T |
5888833 |
gatccatagcaaacaaaattttttgattgagtttttctagttcttgttcttcttgttttagttccctctcccaattgagagaatcttgatctcttgccat |
5888932 |
T |
|
| Q |
222 |
gactgttcctattctttgttcctctgcttccaagtgtgcagcatgagcagtctctaatgactcttttgtggctattagttcaatagttaaatcttccact |
321 |
Q |
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||||||||||||||| ||||| |||||||||| ||||||| ||| || | || || |||||||||||||| || | |||||||| |||||||| || |
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| T |
5888933 |
gactgttcctattctgtgttcttctgcttccatatgtgcagaatgtgctgattccaaagactcttttgtggcaatcaactcaatagtcaaatcttcaacc |
5889032 |
T |
|
| Q |
322 |
gacttctctacttccttggatgctgtaactgcctcctcggctttcttaatagcttc |
377 |
Q |
| |
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| ||| ||||||| ||| ||||| | ||| || || |||||||| | ||||||||| |
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|
| T |
5889033 |
gtcttttctacttgcttcgatgcagcaacagcatcttcggctttgtcaatagcttc |
5889088 |
T |
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