View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0343_high_11 (Length: 266)
Name: NF0343_high_11
Description: NF0343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0343_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 9e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 25 - 194
Target Start/End: Complemental strand, 20989987 - 20989818
Alignment:
| Q |
25 |
agaacaaccgatttaaacaacaaaaactaacatccagcnnnnnnnttattaagccttagctttagcaaaagacatatgcctgcaagatagaaatagaaaa |
124 |
Q |
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| T |
20989987 |
agaacaaccgatttaaacaacaaaaactaacatccagcaaaaaaattattaagccttagctttagcaaaagacatatgcctgcaagatagaaatagaaaa |
20989888 |
T |
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| Q |
125 |
tctataacaaaggaaactctctcagacacataattttggtgcatgcaatatacaaaacaaataaacttct |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20989887 |
tctataacaaaggaaactctctcagacacataattttggtgcatgcaatatacaaaacaaataaacttct |
20989818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 21000134 - 21000047
Alignment:
| Q |
25 |
agaacaaccgatttaaacaacaaaaactaacatccagcnnnnnnnttattaagccttagcttt-agcaaaagacatatgcctgcaagat |
112 |
Q |
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|||||||| | |||||||||||||||| ||||| |||| | |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
21000134 |
agaacaactggtttaaacaacaaaaaccaacattcagcaaaaaa-tcattaagccttagcttttagcaaaagacatatgcctgcaagat |
21000047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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