View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0343_high_2 (Length: 689)
Name: NF0343_high_2
Description: NF0343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0343_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 41 - 323
Target Start/End: Complemental strand, 43935524 - 43935242
Alignment:
| Q |
41 |
acctgtggaacaccattgtcagctaggtctttgttttcaagtctgtattcatgcataacccaatcagttcggtctcctttaggagctttgccagtgtgaa |
140 |
Q |
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| T |
43935524 |
acctgtggaacaccattgtcagctaggtctttgttttcgagtctgtattcatgcataacccaatcagttcggtctcctttaggagctttgccagtgtgaa |
43935425 |
T |
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| Q |
141 |
acaccagggttcttatcatccccaccacttgattcctatgttcaatcgacctatccttccctgtagtcttccagtagcctacttctgttgcccgattcat |
240 |
Q |
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| T |
43935424 |
acaccagggttcttatcatccccaccacttgattcctatgttcaatcgacctatccttccctgtagtcttccagtagcctacttctgttgcccgattcat |
43935325 |
T |
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| Q |
241 |
cctccctcccgtgcaatatttctttccgacaggggtaaagaagtaccattgcaaatcaccactcttgagcaaagatttttctg |
323 |
Q |
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| T |
43935324 |
cctccctcccgtgcaatatttctttccgacaggggtaaagaagtaccattgcaaatcaccactcttgagcaaagatttttctg |
43935242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 396 - 582
Target Start/End: Complemental strand, 43935169 - 43934983
Alignment:
| Q |
396 |
tactcgagtgtcattgaatccaaacctggtagatcccatggagcatacttgtaaatgtcaagttcatcaatgacattaaaagggaattttctacccaaaa |
495 |
Q |
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| T |
43935169 |
tactcgagtgtcattgaatccaaacctggtagatcccatggagcatacttgtaaatgtcaagttcatcaatgacattaaaagggaattttctacccaaaa |
43935070 |
T |
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| Q |
496 |
tcttcctcttgagaaaatacattaccagctcaacatcagtggggtgaaaacgaaaccctggaatcatcaattttgtttcggccatgg |
582 |
Q |
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| T |
43935069 |
tcttcctcttgagaaaatacattaccagctcaacatcagtggggtgaaaacgaaaccctggaatcatcaattttgtttcggccatgg |
43934983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 419 - 471
Target Start/End: Complemental strand, 39134126 - 39134074
Alignment:
| Q |
419 |
acctggtagatcccatggagcatacttgtaaatgtcaagttcatcaatgacat |
471 |
Q |
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| T |
39134126 |
acctgggagatcccaaggagcatatttgtatatgtcaagttcagcaatgacat |
39134074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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