View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0343_high_3 (Length: 475)
Name: NF0343_high_3
Description: NF0343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0343_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 8 - 446
Target Start/End: Original strand, 925345 - 925779
Alignment:
| Q |
8 |
gagcagagacagaatggataaggcatcaccannnnnnngtatacatttgatcttcctaggacgcatgttcaaatgtatatgcgaagtatctcatattagt |
107 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
925345 |
gagcagaaacagaatggataaggcatcaccatttttttgtatacatttgatcttcctaggacgcatgttcaaatgtatatgcgaagtatctcatattagt |
925444 |
T |
|
| Q |
108 |
ca-------tgtacaatatgnnnnnnngttagaggatgtaaaatctgtttaaagnnnnnnngaaattacatacatatacatatgagtggagcatcgttac |
200 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
925445 |
caatagtcatgtacaatatgtttttttgttagaggatgtaaaatctgtttaaagaaaaaaagaaattacatacatat------gagtggagcatcgttac |
925538 |
T |
|
| Q |
201 |
tttaaaacgtacacatacatatactttttcaattttaaagcatctagacctcatagatctaaatcaatatcttaattacttgataggagattgtacgatg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
925539 |
tttaaaacgtacacatacatatactttttcaattttaaagcatct---------------aaatcaataccttaattacttgataggagattgtacgatg |
925623 |
T |
|
| Q |
301 |
atatatctgaatcatggttcaattagattgtatcggacaaccaataaatt----------aatnnnnnnnnttaaatgataaatgcaaagtgtcctctaa |
390 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||| ||| |
|
|
| T |
925624 |
atatatctggatcatggttcaattagattgaatcggacaaccaataaattaataaaataaaataaaaaaaattaaatgataaatgcaaagtgtcctttaa |
925723 |
T |
|
| Q |
391 |
ttttgttacatatatttaatcatagttgaagatcagtagaaagaagactgaacatg |
446 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
925724 |
ttttgttacatatatttaatcatagttgaatatcagtagaaagaagactgaacatg |
925779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 446
Target Start/End: Original strand, 935203 - 935241
Alignment:
| Q |
408 |
aatcatagttgaagatcagtagaaagaagactgaacatg |
446 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
935203 |
aatcatagttgaagatcagtaaaaagaagactgaacatg |
935241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University