View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0343_high_5 (Length: 285)
Name: NF0343_high_5
Description: NF0343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0343_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 47815973 - 47815717
Alignment:
| Q |
1 |
acaatcatatgactaaatacaaggaaggtgcttcagaactagtctaaccatcttgatgcaagaaagttactttccagtcaaaatgtagtagtagaag-aa |
99 |
Q |
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| T |
47815973 |
acaatcatatgactaaatacaaggaaggtgcttcagaactagtctaaccatcttgatgcaagaaagttactttccagtcaaaatgtagtattagaagtaa |
47815874 |
T |
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| Q |
100 |
atggacaatatgttgaaaacatattaatacattgagcaacttgaacatgtttgcggtgctgaaaaacaaagagcaaataccctgaaccaaaccaacaaca |
199 |
Q |
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| T |
47815873 |
atggacaatatgttgaaaacatattaatacattgatcaacttgaacatgtttgcggtgctgaaaaacaaagagcaaataccctgaaccaaaccaacaaca |
47815774 |
T |
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| Q |
200 |
atttgtagactagaaatagaaaagnnnnnnnncaccaacctgctttccctctatggt |
256 |
Q |
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| T |
47815773 |
atttgtagactagaaatagaaaagaaaaaaaacaccaacctgctttccctctatggt |
47815717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 47380506 - 47380288
Alignment:
| Q |
1 |
acaatcatatgactaaatacaagg-aaggtgcttcagaactagtctaaccatcttgatgcaagaaagttactttccagtcaaaatgtagtagtagaag-a |
98 |
Q |
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| T |
47380506 |
acaatcatatgactaaatacaacgcaaggtgctccagaactagtctaaccatcttgatgcaagaaagttactttccagtcaaaatgtagtattggaagta |
47380407 |
T |
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| Q |
99 |
aatggac-aatatgttgaaaacatattaatacattgagcaacttgaacatgtttgcggtgctgaaaaacaaagagcaaataccctgaaccaaaccaacaa |
197 |
Q |
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| T |
47380406 |
aatgggcaaatatgttgaaatcatattaatacattgagcaacttgaacatgtttgtggtgctgaaaaagaaagagcaaata-----aaccaaaccaacaa |
47380312 |
T |
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| Q |
198 |
caatttgtagactagaaatagaaa |
221 |
Q |
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||||||||| |||||||||||||| |
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| T |
47380311 |
caatttgtaaactagaaatagaaa |
47380288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 17717712 - 17717456
Alignment:
| Q |
1 |
acaatcatatgactaaatacaaggaaggtgcttcagaactagtctaaccatcttgatgcaagaaagttactttccagtcaaaatgtagtagtagaag-aa |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
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| T |
17717712 |
acaatcatatgactaaatacaaggaaggtgcttcagaactagtctaaccatcttgatgcaagaaagttactttccagtcaaaatgtagtattagaagtaa |
17717613 |
T |
|
| Q |
100 |
atggacaatatgttgaaaacatattaatacattgagcaacttgaacatgtttgcggtgctgaaaaacaaagagcaaataccctgaaccaaaccaacaaca |
199 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17717612 |
atggacaatatgttgaaaacatattaatacattgaacaacttgaacatgtttgcggtgctgaaaaacaaagagcaaataccctgaaccaaaccaacaaca |
17717513 |
T |
|
| Q |
200 |
atttgtagactagaaatagaaaagnnnnnnnncaccaacctgctttccctctatggt |
256 |
Q |
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| |||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
17717512 |
aattgtagactagaaataaaaaagaaaaaaaacaccaacctgctttccctctatggt |
17717456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 42 - 221
Target Start/End: Original strand, 34055921 - 34056103
Alignment:
| Q |
42 |
gtctaaccatcttgatgcaagaaagttactttccagtcaaaatgtagtagtagaag-aaatggacaatatgttgaaaacatattaatacattgagcaact |
140 |
Q |
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|||||||||||||||| ||||| | |||||| ||||||||||||||||| |||||| |||||||||||||||||||| |||||||||| || |||||||| |
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| T |
34055921 |
gtctaaccatcttgatacaagacaattacttcccagtcaaaatgtagtattagaagtaaatggacaatatgttgaaatcatattaataaatggagcaact |
34056020 |
T |
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| Q |
141 |
tgaacatgtttgcggtg---ctgaaaaacaaagagcaaataccctgaaccaaaccaacaacaatttgtagactagaaatagaaa |
221 |
Q |
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|||||||||||| |||| ||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34056021 |
tgaacatgtttgtggtggcgctgaaaag-aaagagcagataccctgaatcaaaccaacaacaatttgtagactagaaatagaaa |
34056103 |
T |
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