View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0343_low_10 (Length: 284)
Name: NF0343_low_10
Description: NF0343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0343_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 47815949 - 47816209
Alignment:
| Q |
1 |
tccttgtatttagtcatatgattgtgttgttgttttgagtttctgtattgggtctgttttaagttcttagatatggaattttagcatattttttggtgtc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47815949 |
tccttgtatttagtcatatgattgtgttgttgttttgagtttctgtattgggtctgttttaagttcttagatatggaattttagcatattttttggtgtc |
47816048 |
T |
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| Q |
101 |
ttgagtgacatgaaagcctcattctgcatgatttaggttataaccctagatatgggtctacttgttgctggatctaaatatcgtggagaatttgaggaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47816049 |
ttgagtgacatgaaagcctcattctgcatgatttaggttataaccctagatatgggtctacttgttgctggatctaaatatcgtggagaatttgaggaga |
47816148 |
T |
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| Q |
201 |
gattaaataaactaatggaggaaatcaaacaaagtgatgaaataatacttttcattgatga |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47816149 |
gattaaataaactaatggaggaaatcaaacaaagtgatgaaataatacttttcattgatga |
47816209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 4 - 261
Target Start/End: Original strand, 47380485 - 47380738
Alignment:
| Q |
4 |
ttgtatttagtcatatgattgtgttgttgttttgagtttctgtattgggtctgttttaagttcttagatatggaattttagcatattttttggtgtcttg |
103 |
Q |
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| T |
47380485 |
ttgtatttagtcatatgattgtgttgttgttttgagtttctgtattgggtccgttttaagttcttagatatggaattttagcatattttttggcgtcttg |
47380584 |
T |
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| Q |
104 |
agtgacatgaaagcctcattctgcatgatttaggttataaccctagatatgggtctacttgttgctggatctaaatatcgtggagaatttgaggagagat |
203 |
Q |
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| T |
47380585 |
a----catgaaagcctcattctgcatgatttaggttataaccctggatatgggtctacttgttgctggaactaaatatcgtggagaatttgaggagagat |
47380680 |
T |
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| Q |
204 |
taaataaactaatggaggaaatcaaacaaagtgatgaaataatacttttcattgatga |
261 |
Q |
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| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
47380681 |
tgaaaaaactaatggaggaaattaaacaaagtgatgaaataatacttttcattgatga |
47380738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 134 - 261
Target Start/End: Original strand, 45112703 - 45112830
Alignment:
| Q |
134 |
taggttataaccctagatatgggtctacttgttgctggatctaaatatcgtggagaatttgaggagagattaaataaactaatggaggaaatcaaacaaa |
233 |
Q |
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||||||||||||||||| |||||| | ||||| || ||| | ||||| ||||| || ||||||||||| || || ||||| ||||| ||||||||||||| |
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| T |
45112703 |
taggttataaccctagacatgggtttgcttgtagccggaaccaaataccgtggtgagtttgaggagaggttgaagaaactgatggaagaaatcaaacaaa |
45112802 |
T |
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| Q |
234 |
gtgatgaaataatacttttcattgatga |
261 |
Q |
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||||||| ||||||||||| || ||||| |
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| T |
45112803 |
gtgatgatataatactttttatcgatga |
45112830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 17717688 - 17717949
Alignment:
| Q |
1 |
tccttgtatttagtcatatgattgtgttgttgtttt-gagtttctgtattgggtctgttttaagttcttagatatggaattttagcatattttttggtgt |
99 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17717688 |
tccttgtatttagtcatatgattgtgttgttgtttttgagtttctgtattgggtctgttttaagttcttagatatggaattttagcatattttttggtgt |
17717787 |
T |
|
| Q |
100 |
cttgagtgacatgaaagcctcattctgcatgatttaggttataaccctagatatgggtctacttgttgctggatctaaatatcgtggagaatttgaggag |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17717788 |
cttgagtgacatgaaagcctcattctgcatgatttaggttataaccctagatatgggtctacttgttgctggatctaaatatcgtggagaatttgaggag |
17717887 |
T |
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| Q |
200 |
agattaaataaactaatggaggaaatcaaacaaagtgatgaaataatacttttcattgatga |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17717888 |
agattaaataaactaatggaggaaatcaaacaaagtgatgaaataatacttttcattgatga |
17717949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 90 - 261
Target Start/End: Original strand, 40243454 - 40243625
Alignment:
| Q |
90 |
tttttggtgtcttgagtgacatgaaagcctcattctgcatgatttaggttataaccctagatatgggtctacttgttgctggatctaaatatcgtggaga |
189 |
Q |
| |
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|||| |||||| ||| |||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||| |||||||| |
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| T |
40243454 |
ttttgggtgtcctgaatgacgtgaaagccttgttctgcatgatgcaggttataaccctagatatgggtctacttgtagctggaactaaataccgtggaga |
40243553 |
T |
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| Q |
190 |
atttgaggagagattaaataaactaatggaggaaatcaaacaaagtgatgaaataatacttttcattgatga |
261 |
Q |
| |
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|||||| || ||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40243554 |
atttgaagaaagattgaaaaaactaatggaggaaatcaaacaaagcgatgaaataatacttttcattgatga |
40243625 |
T |
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