View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0343_low_5 (Length: 382)

Name: NF0343_low_5
Description: NF0343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0343_low_5
NF0343_low_5
[»] chr8 (5 HSPs)
chr8 (7-371)||(25890957-25891321)
chr8 (7-59)||(18309115-18309167)
chr8 (135-207)||(37718866-37718938)
chr8 (242-345)||(37718973-37719076)
chr8 (309-345)||(42649412-42649448)
[»] chr7 (9 HSPs)
chr7 (7-198)||(17506963-17507154)
chr7 (7-198)||(17546060-17546251)
chr7 (194-371)||(17504442-17504619)
chr7 (194-371)||(17548595-17548772)
chr7 (29-284)||(15645130-15645385)
chr7 (242-345)||(551464-551567)
chr7 (135-210)||(551599-551674)
chr7 (292-347)||(45165468-45165523)
chr7 (305-347)||(39694660-39694702)
[»] chr3 (1 HSPs)
chr3 (48-371)||(14853834-14854157)
[»] chr6 (5 HSPs)
chr6 (29-210)||(7956698-7956879)
chr6 (251-371)||(18588487-18588607)
chr6 (254-371)||(7956553-7956670)
chr6 (305-371)||(15602513-15602579)
chr6 (113-211)||(15602321-15602419)
[»] chr1 (4 HSPs)
chr1 (7-103)||(39584909-39585005)
chr1 (305-371)||(30712764-30712830)
chr1 (132-210)||(9991072-9991150)
chr1 (300-347)||(9991241-9991292)
[»] scaffold0024 (1 HSPs)
scaffold0024 (272-345)||(87113-87186)
[»] chr4 (3 HSPs)
chr4 (305-371)||(54684799-54684865)
chr4 (292-347)||(19163086-19163141)
chr4 (305-348)||(40688256-40688299)
[»] chr2 (4 HSPs)
chr2 (182-347)||(1468062-1468227)
chr2 (305-347)||(6727686-6727728)
chr2 (305-347)||(2207731-2207773)
chr2 (303-345)||(44029117-44029159)
[»] scaffold0351 (1 HSPs)
scaffold0351 (292-347)||(12901-12956)
[»] chr5 (3 HSPs)
chr5 (305-347)||(36255968-36256010)
chr5 (45-98)||(32239707-32239760)
chr5 (132-200)||(3168581-3168649)


Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 7 - 371
Target Start/End: Original strand, 25890957 - 25891321
Alignment:
Q  7 gcaccagagaccacagctccctaaagcaaggacacgaaagaaacaaatgactagcatcctccacctggccgcaccccgaaatacacaaagaatcggtcac 106  Q
    ||||||||||||||||||||| |||||||| ||| || ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||    
T  25890957 gcaccagagaccacagctccccaaagcaagaacaagagagaaacaaatgacgagcatcctccacctggccacaccccgaaatacacaaagaatcggccac 25891056  T
Q  107 attaagaataccacgtgatgccaggttagatttagtaggtaatcgatcacggagcagtcgccacgcacaaattgacaccttaagaggaacctgattatgc 206  Q
     ||||| ||||||||||||||||  ||||||||||||||||  |||||||||||||||||||| ||| | ||||||||||| ||||||||||||||||||    
T  25891057 tttaagtataccacgtgatgccaaattagatttagtaggtaggcgatcacggagcagtcgccatgcaaagattgacacctttagaggaacctgattatgc 25891156  T
Q  207 caaacaaggtccacaaccggattatcctgcggtacctcctgagatgtgagcatataatacacagaacgaacagagtaaacgcctgaaggatctggtaacc 306  Q
    ||||  |||||  ||||| || || |||||||||||||||||| ||||||||||||||||||||||||  |||| ||||||||||| |||||||||||||    
T  25891157 caaattaggtcggcaacctgagtaacctgcggtacctcctgagttgtgagcatataatacacagaacggccagaataaacgcctgagggatctggtaacc 25891256  T
Q  307 actgccaaacatcataagaaagagcctgcaaagaaacattaagtaataacaacctacgctcctct 371  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  25891257 actgccacacatcataagaaagagcctgcaaagaaacattaagtaataacatcctacactcctct 25891321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 18309167 - 18309115
Alignment:
Q  7 gcaccagagaccacagctccctaaagcaaggacacgaaagaaacaaatgacta 59  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  18309167 gcaccagagaccacagctccccaaagcaaggacacgagagaaacaaatgacta 18309115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 37718866 - 37718938
Alignment:
Q  135 gatttagtaggtaatcgatcacggagcagtcgccacgcacaaattgacaccttaagaggaacctgattatgcc 207  Q
    ||||| |||||||| |||||||||||||| ||||| ||| ||||||||||||| |  |||||||| |||||||    
T  37718866 gatttggtaggtaagcgatcacggagcagccgccaagcaaaaattgacacctttaagggaacctgtttatgcc 37718938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 242 - 345
Target Start/End: Original strand, 37718973 - 37719076
Alignment:
Q  242 ctcctgagatgtgagcatataatacacagaacgaacagagtaaacgcctgaaggatctggtaaccactgccaaacatcataagaaagagcctgcaaagaa 341  Q
    |||||||| ||||||||||| ||||||   | ||||||||||  |  | |||||  | |||||||| ||||||||| |||| ||||||| ||||||||||    
T  37718973 ctcctgagttgtgagcatatcatacactccatgaacagagtagccttcggaagggcccggtaaccagtgccaaacaccatacgaaagaggctgcaaagaa 37719072  T
Q  342 acat 345  Q
    ||||    
T  37719073 acat 37719076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 345
Target Start/End: Original strand, 42649412 - 42649448
Alignment:
Q  309 tgccaaacatcataagaaagagcctgcaaagaaacat 345  Q
    ||||| |||||||||||||||| ||||||||||||||    
T  42649412 tgccacacatcataagaaagaggctgcaaagaaacat 42649448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 148; Significance: 5e-78; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 7 - 198
Target Start/End: Complemental strand, 17507154 - 17506963
Alignment:
Q  7 gcaccagagaccacagctccctaaagcaaggacacgaaagaaacaaatgactagcatcctccacctggccgcaccccgaaatacacaaagaatcggtcac 106  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  17507154 gcaccagagaccacagctccccaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccacaccccgaaatacaccaagaatcggtcac 17507055  T
Q  107 attaagaataccacgtgatgccaggttagatttagtaggtaatcgatcacggagcagtcgccacgcacaaattgacaccttaagaggaacct 198  Q
    |||||| ||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||| | ||||||||||| ||||||||||    
T  17507054 attaagtataccacgtgatgccagattagatttagtaggtatgcgatcacggagcagtcgccacgcaaatattgacacctttagaggaacct 17506963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 7 - 198
Target Start/End: Original strand, 17546060 - 17546251
Alignment:
Q  7 gcaccagagaccacagctccctaaagcaaggacacgaaagaaacaaatgactagcatcctccacctggccgcaccccgaaatacacaaagaatcggtcac 106  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  17546060 gcaccagagaccacagctccccaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccacaccccgaaatacaccaagaatcggtcac 17546159  T
Q  107 attaagaataccacgtgatgccaggttagatttagtaggtaatcgatcacggagcagtcgccacgcacaaattgacaccttaagaggaacct 198  Q
    |||||| ||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||| | ||||||||||| ||||||||||    
T  17546160 attaagtataccacgtgatgccagattagatttagtaggtatgcgatcacggagcagtcgccacgcaaatattgacacctttagaggaacct 17546251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 194 - 371
Target Start/End: Complemental strand, 17504619 - 17504442
Alignment:
Q  194 aacctgattatgccaaacaaggtccacaaccggattatcctgcggtacctcctgagatgtgagcatataatacacagaacgaacagagtaaacgcctgaa 293  Q
    |||||||||||||||||  || ||  ||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17504619 aacctgattatgccaaattagatcgtcaacctgagtaacctgcggtacctcctgagatgtgagcatataatacacagaacgaacagagtaaacgcctgaa 17504520  T
Q  294 ggatctggtaaccactgccaaacatcataagaaagagcctgcaaagaaacattaagtaataacaacctacgctcctct 371  Q
    || ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||    
T  17504519 ggctctggtaaccactgccatacatcataagaaatagcctgcaaagaaacattaagtaataacatcctacactcctct 17504442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 194 - 371
Target Start/End: Original strand, 17548595 - 17548772
Alignment:
Q  194 aacctgattatgccaaacaaggtccacaaccggattatcctgcggtacctcctgagatgtgagcatataatacacagaacgaacagagtaaacgcctgaa 293  Q
    |||||||||||||||||  || ||  ||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17548595 aacctgattatgccaaattagatcgtcaacctgagtaacctgcggtacctcctgagatgtgagcatataatacacagaacgaacagagtaaacgcctgaa 17548694  T
Q  294 ggatctggtaaccactgccaaacatcataagaaagagcctgcaaagaaacattaagtaataacaacctacgctcctct 371  Q
    || ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||    
T  17548695 ggctctggtaaccactgccatacatcataagaaatagcctgcaaagaaacattaagtaataacatcctacactcctct 17548772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 29 - 284
Target Start/End: Original strand, 15645130 - 15645385
Alignment:
Q  29 aaagcaaggacacgaaagaaacaaatgactagcatcctccacctggccgcaccccgaaatacacaaagaatcggtcacattaagaataccacgtgatgcc 128  Q
    |||||||||||| || | ||||||||||  |||||||||||||||||| |||||||||| ||||| |||| ||  ||||||||  |||||||||||||||    
T  15645130 aaagcaaggacaagagaaaaacaaatgatgagcatcctccacctggccacaccccgaaacacacatagaagcgtccacattaattataccacgtgatgcc 15645229  T
Q  129 aggttagatttagtaggtaatcgatcacggagcagtcgccacgcacaaattgacaccttaagaggaacctgattatgccaaacaaggtccacaaccggat 228  Q
    | ||||||||||||||| |    |||||||||||| ||||| ||| | | ||||||||| || |||| ||| ||||||||||  || || | | || ||     
T  15645230 aagttagatttagtaggaaggtaatcacggagcagccgccaagcaaagactgacacctttagtggaatctgtttatgccaaattagatctaaatcctgag 15645329  T
Q  229 tatcctgcggtacctcctgagatgtgagcatataatacacagaacgaacagagtaa 284  Q
    || ||||| ||||||| |||| ||||  ||||  |||||||||||||||| |||||    
T  15645330 taacctgcagtacctcgtgagttgtggtcataacatacacagaacgaacatagtaa 15645385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 345
Target Start/End: Complemental strand, 551567 - 551464
Alignment:
Q  242 ctcctgagatgtgagcatataatacacagaacgaacagagtaaacgcctgaaggatctggtaaccactgccaaacatcataagaaagagcctgcaaagaa 341  Q
    |||||||  ||||||||||| ||| ||   ||||||||||||| |  | ||||| || ||||||||||||||||||||| | ||| ||| ||||||||||    
T  551567 ctcctgatttgtgagcatatcatataccccacgaacagagtaaccttcggaagggtccggtaaccactgccaaacatcaaacgaaggaggctgcaaagaa 551468  T
Q  342 acat 345  Q
    ||||    
T  551467 acat 551464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 210
Target Start/End: Complemental strand, 551674 - 551599
Alignment:
Q  135 gatttagtaggtaatcgatcacggagcagtcgccacgcacaaattgacaccttaagaggaacctgattatgccaaa 210  Q
    ||||| ||||| || |||||||||| ||| ||||| ||| ||||||||||||| | ||||||||| ||||||||||    
T  551674 gatttggtaggcaagcgatcacggatcagccgccaagcaaaaattgacacctttaaaggaacctgtttatgccaaa 551599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 292 - 347
Target Start/End: Complemental strand, 45165523 - 45165468
Alignment:
Q  292 aaggatctggtaaccactgccaaacatcataagaaagagcctgcaaagaaacatta 347  Q
    |||| ||||||  ||||||||| |||||||||||||||| ||||||||||||||||    
T  45165523 aagggtctggttgccactgccacacatcataagaaagaggctgcaaagaaacatta 45165468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 305 - 347
Target Start/End: Original strand, 39694660 - 39694702
Alignment:
Q  305 ccactgccaaacatcataagaaagagcctgcaaagaaacatta 347  Q
    ||||||||| |||||||||||||||| ||||||||||||||||    
T  39694660 ccactgccacacatcataagaaagaggctgcaaagaaacatta 39694702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 48 - 371
Target Start/End: Original strand, 14853834 - 14854157
Alignment:
Q  48 aacaaatgactagcatcctccacctggccgcaccccgaaatacacaaagaatcggtcacattaagaataccacgtgatgccaggttagatttagtaggta 147  Q
    |||||||||| ||||||||||||||| || |||||||||| ||||| |||| |   ||||||||  |||||||||||||||| |||||||||||||||      
T  14853834 aacaaatgacgagcatcctccacctgaccacaccccgaaacacacatagaagcatccacattaattataccacgtgatgccaagttagatttagtaggag 14853933  T
Q  148 atcgatcacggagcagtcgccacgcacaaattgacaccttaagaggaacctgattatgccaaacaaggtccacaaccggattatcctgcggtacctcctg 247  Q
      |||||||||||||| ||||| ||| | | ||||||||| ||  ||||||| ||||||||||  |  || ||| || || || ||||||||||||||||    
T  14853934 gacgatcacggagcagccgccaagcaaagactgacacctttaggagaacctgtttatgccaaatcaaatcgacatcctgagtaacctgcggtacctcctg 14854033  T
Q  248 agatgtgagcatataatacacagaacgaacagagtaaacgcctgaaggatctggtaaccactgccaaacatcataagaaagagcctgcaaagaaacatta 347  Q
    || ||||||||||  ||||| |||||||||| ||||| | ||||| ||||| |||||||||||||| |||||||||||||||| ||||||||||||||||    
T  14854034 agttgtgagcataacatacatagaacgaacaaagtaatcacctgagggatccggtaaccactgccacacatcataagaaagagactgcaaagaaacatta 14854133  T
Q  348 agtaataacaacctacgctcctct 371  Q
    || | |||||  |||| |||||||    
T  14854134 agaagtaacattctacactcctct 14854157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 29 - 210
Target Start/End: Complemental strand, 7956879 - 7956698
Alignment:
Q  29 aaagcaaggacacgaaagaaacaaatgactagcatcctccacctggccgcaccccgaaatacacaaagaatcggtcacattaagaataccacgtgatgcc 128  Q
    |||||||||||| || ||||||||||||| |||||||||||||||||| |||||||||| ||||| |||| ||  ||||||||  |||||||| ||||||    
T  7956879 aaagcaaggacatgagagaaacaaatgacgagcatcctccacctggccacaccccgaaacacacatagaagcgtccacattaattataccacgagatgcc 7956780  T
Q  129 aggttagatttagtaggtaatcgatcacggagcagtcgccacgcacaaattgacaccttaagaggaacctgattatgccaaa 210  Q
    | ||||||||||||||| |  |||||||||||||  ||||| ||| | | ||||||||| || |||||||| ||||||||||    
T  7956779 aagttagatttagtaggaaggcgatcacggagcaaccgccaagcaaagactgacacctttaggggaacctgtttatgccaaa 7956698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 251 - 371
Target Start/End: Original strand, 18588487 - 18588607
Alignment:
Q  251 tgtgagcatataatacacagaacgaacagagtaaacgcctgaaggatctggtaaccactgccaaacatcataagaaagagcctgcaaagaaacattaagt 350  Q
    ||||||||||  |||||||||||||||||||||| | | ||| ||||| |||||||||| ||| |||||||||||||||| ||||||||||||||||||     
T  18588487 tgtgagcatagcatacacagaacgaacagagtaacctcttgatggatccggtaaccactaccacacatcataagaaagaggctgcaaagaaacattaaga 18588586  T
Q  351 aataacaacctacgctcctct 371  Q
    | ||||||||||| |||||||    
T  18588587 agtaacaacctacactcctct 18588607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 254 - 371
Target Start/End: Complemental strand, 7956670 - 7956553
Alignment:
Q  254 gagcatataatacacagaacgaacagagtaaacgcctgaaggatctggtaaccactgccaaacatcataagaaagagcctgcaaagaaacattaagtaat 353  Q
    |||||||  ||||| |||||||||| ||||| |  |||| ||||| |||||||||||||| |||||||||||||||| |||||||||||||||| | | |    
T  7956670 gagcataacatacatagaacgaacaaagtaaccttctgagggatccggtaaccactgccacacatcataagaaagagactgcaaagaaacattatgaagt 7956571  T
Q  354 aacaacctacgctcctct 371  Q
    |||||||||  |||||||    
T  7956570 aacaacctagactcctct 7956553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 305 - 371
Target Start/End: Original strand, 15602513 - 15602579
Alignment:
Q  305 ccactgccaaacatcataagaaagagcctgcaaagaaacattaagtaa-taacaacctacgctcctct 371  Q
    ||||||||| |||||||||||||||| ||||||||||||||| ||||| ||||||||||| |||||||    
T  15602513 ccactgccacacatcataagaaagaggctgcaaagaaacatt-agtaagtaacaacctacactcctct 15602579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 211
Target Start/End: Original strand, 15602321 - 15602419
Alignment:
Q  113 aataccacgtgatgccaggttagatttagtaggtaatcgatcacggagcagtcgccacgcacaaattgacaccttaagaggaacctgattatgccaaac 211  Q
    ||||||||| | ||| | |||||| ||||| || ||||||||||| ||||  ||||| ||| |||| ||||||||||  ||||| || |||||||||||    
T  15602321 aataccacgggttgctaagttagacttagtgggaaatcgatcacgaagcaaccgccaagcaaaaatagacaccttaatcggaacatggttatgccaaac 15602419  T

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Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 7 - 103
Target Start/End: Original strand, 39584909 - 39585005
Alignment:
Q  7 gcaccagagaccacagctccctaaagcaaggacacgaaagaaacaaatgactagcatcctccacctggccgcaccccgaaatacacaaagaatcggt 103  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||    
T  39584909 gcaccagagaccacaactccctaaagcaaggacacgagagaaacaaatgacgagcatcctccacctggccacaccccaaaatacacaaagaatcggt 39585005  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 305 - 371
Target Start/End: Complemental strand, 30712830 - 30712764
Alignment:
Q  305 ccactgccaaacatcataagaaagagcctgcaaagaaacattaagtaa-taacaacctacgctcctct 371  Q
    ||||||||| |||||||||||||||| ||||| |||||||||| |||| ||||||||||| |||||||    
T  30712830 ccactgccacacatcataagaaagaggctgcagagaaacatta-gtaagtaacaacctacactcctct 30712764  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 210
Target Start/End: Original strand, 9991072 - 9991150
Alignment:
Q  132 ttagatttagtaggtaatcgatcacggagcagtcgccacgcacaaattgacaccttaagaggaacctgattatgccaaa 210  Q
    |||||||||||||| |   ||||||| ||||| ||||| ||| |||| | ||||||||| |||||||| ||||||||||    
T  9991072 ttagatttagtaggaaggtgatcacgaagcagccgccaagcaaaaataggcaccttaagcggaacctgtttatgccaaa 9991150  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 347
Target Start/End: Original strand, 9991241 - 9991292
Alignment:
Q  300 ggtaaccactgccaaacatca----taagaaagagcctgcaaagaaacatta 347  Q
    |||||||||||||||||||||    |||||||||| ||||||||||||||||    
T  9991241 ggtaaccactgccaaacatcataattaagaaagaggctgcaaagaaacatta 9991292  T

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Target: scaffold0024 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 272 - 345
Target Start/End: Complemental strand, 87186 - 87113
Alignment:
Q  272 acgaacagagtaaacgcctgaaggatctggtaaccactgccaaacatcataagaaagagcctgcaaagaaacat 345  Q
    |||||| |||||| | || | |||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  87186 acgaaccgagtaacctccagcaggatccggtaaccactgccaaacatcataagaaagaggctgcaaagaaacat 87113  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 305 - 371
Target Start/End: Original strand, 54684799 - 54684865
Alignment:
Q  305 ccactgccaaacatcataagaaagagcctgcaaagaaacattaagtaa-taacaacctacgctcctct 371  Q
    ||||||||| |||||||||||||||| ||||||||||||||| ||||| ||||||||||| |||||||    
T  54684799 ccactgccacacatcataagaaagaggctgcaaagaaacatt-agtaagtaacaacctacactcctct 54684865  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 292 - 347
Target Start/End: Complemental strand, 19163141 - 19163086
Alignment:
Q  292 aaggatctggtaaccactgccaaacatcataagaaagagcctgcaaagaaacatta 347  Q
    ||||||| |||  ||||||||| ||||||||||||||||  |||||||||||||||    
T  19163141 aaggatccggttgccactgccacacatcataagaaagaggttgcaaagaaacatta 19163086  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 348
Target Start/End: Original strand, 40688256 - 40688299
Alignment:
Q  305 ccactgccaaacatcataagaaagagcctgcaaagaaacattaa 348  Q
    ||||||||| |||||||||||||||| |||||| ||||||||||    
T  40688256 ccactgccacacatcataagaaagaggctgcaatgaaacattaa 40688299  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 347
Target Start/End: Original strand, 1468062 - 1468227
Alignment:
Q  182 caccttaagaggaacctgattatgccaaacaaggtccacaaccggattatcctgcggtacctcctgagatgtgagcatataatacacagaacgaacagag 281  Q
    |||||||||||| ||||| ||||||||||  | ||| |||||| |  |||||||||||| |||||||   |||||||||  |||||||  ||||||| |     
T  1468062 caccttaagaggtacctgtttatgccaaatcaagtcaacaacctgcctatcctgcggtaactcctgatcagtgagcatagcatacacaccacgaacataa 1468161  T
Q  282 taaacgcctgaaggatctggtaaccactgccaaacatcataagaaagagcctgcaaagaaacatta 347  Q
    ||  |  |  | ||||| || | |||||| || |||||||||||||||| ||||||||||||||||    
T  1468162 tacccttcgaagggatccgggagccactgtcacacatcataagaaagaggctgcaaagaaacatta 1468227  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 305 - 347
Target Start/End: Complemental strand, 6727728 - 6727686
Alignment:
Q  305 ccactgccaaacatcataagaaagagcctgcaaagaaacatta 347  Q
    ||||||||| |||||||||||||||| ||||||||||||||||    
T  6727728 ccactgccacacatcataagaaagaggctgcaaagaaacatta 6727686  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 347
Target Start/End: Complemental strand, 2207773 - 2207731
Alignment:
Q  305 ccactgccaaacatcataagaaagagcctgcaaagaaacatta 347  Q
    ||||||||| |||||||||||||||| ||| ||||||||||||    
T  2207773 ccactgccacacatcataagaaagaggctgtaaagaaacatta 2207731  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 345
Target Start/End: Complemental strand, 44029159 - 44029117
Alignment:
Q  303 aaccactgccaaacatcataagaaagagcctgcaaagaaacat 345  Q
    |||||||||||||||||| ||||||||| |||||| |||||||    
T  44029159 aaccactgccaaacatcaaaagaaagaggctgcaaggaaacat 44029117  T

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Target: scaffold0351 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 292 - 347
Target Start/End: Complemental strand, 12956 - 12901
Alignment:
Q  292 aaggatctggtaaccactgccaaacatcataagaaagagcctgcaaagaaacatta 347  Q
    ||||||| |||  ||||||||| |||||||||||||||| ||||||||||||||||    
T  12956 aaggatccggttgccactgccacacatcataagaaagaggctgcaaagaaacatta 12901  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 305 - 347
Target Start/End: Original strand, 36255968 - 36256010
Alignment:
Q  305 ccactgccaaacatcataagaaagagcctgcaaagaaacatta 347  Q
    ||||||||| |||||||||||||||| ||||||||||||||||    
T  36255968 ccactgccacacatcataagaaagaggctgcaaagaaacatta 36256010  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 32239707 - 32239760
Alignment:
Q  45 agaaacaaatgactagcatcctccacctggccgcaccccgaaatacacaaagaa 98  Q
    ||||||||||||| ||||||||||||||| || |||||||||| ||||| ||||    
T  32239707 agaaacaaatgacgagcatcctccacctgaccacaccccgaaacacacatagaa 32239760  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 200
Target Start/End: Complemental strand, 3168649 - 3168581
Alignment:
Q  132 ttagatttagtaggtaatcgatcacggagcagtcgccacgcacaaattgacaccttaagaggaacctga 200  Q
    |||| ||| |||||||||||||| ||||  || ||||||||| ||||||| ||||| | ||||||||||    
T  3168649 ttagctttcgtaggtaatcgatctcggataagccgccacgcaaaaattgaaaccttcaaaggaacctga 3168581  T

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