View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0343_low_7 (Length: 308)
Name: NF0343_low_7
Description: NF0343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0343_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 33791189 - 33791107
Alignment:
| Q |
8 |
agatggacatcatcaacagttgatactaatccatcacgtcttcctgtaggaacattgtaacttggtccacctgctaagacaac |
90 |
Q |
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| T |
33791189 |
agatgtacatcattaacagttgatactaatccatcacgtcttcctgtaggaacattgtaacttggtccacctgctaagacaac |
33791107 |
T |
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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 189 - 279
Target Start/End: Complemental strand, 4836444 - 4836354
Alignment:
| Q |
189 |
tctattgtgacagtcaaagtgcaatagaccttagcaagaactctatgtaccatgcaaggaccaaacacattgatgtgagatatcattggat |
279 |
Q |
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| T |
4836444 |
tctattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggtatcattggat |
4836354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 189 - 282
Target Start/End: Original strand, 33811019 - 33811112
Alignment:
| Q |
189 |
tctattgtgacagtcaaagtgcaatagaccttagcaagaactctatgtaccatgcaaggaccaaacacattgatgtgagatatcattggattcg |
282 |
Q |
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| T |
33811019 |
tctattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggtatcattggattcg |
33811112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 189 - 282
Target Start/End: Original strand, 33815937 - 33816030
Alignment:
| Q |
189 |
tctattgtgacagtcaaagtgcaatagaccttagcaagaactctatgtaccatgcaaggaccaaacacattgatgtgagatatcattggattcg |
282 |
Q |
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| T |
33815937 |
tctattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggtatcattggattcg |
33816030 |
T |
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