View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0350_high_18 (Length: 230)
Name: NF0350_high_18
Description: NF0350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0350_high_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 20 - 166
Target Start/End: Complemental strand, 10299439 - 10299293
Alignment:
| Q |
20 |
caattaaaaggtctaattgtttccacagcagtggtggaaaaaatccatgccacatgaatggaaatatttacatgatttcatttggtattgtggagatctt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10299439 |
caattaaaaggtctaattgtttccacagcagtggtggaaaaaatccatgccacatgaatggaaacatttacatgatttcatttggtattgtggagatctt |
10299340 |
T |
|
| Q |
120 |
tttctctcaaattcctgactttgatcagttatggtggctctctgctc |
166 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10299339 |
tttctctcaaattcctgactttgatcagttatggtggctctctgctc |
10299293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 40204135 - 40204276
Alignment:
| Q |
20 |
caattaaaaggtctaattgtttccacagcagtggtggaaaaaatccatgccacatgaatggaaatatttacatgatttcatttggtattgtggagatctt |
119 |
Q |
| |
|
||||| ||||||| ||||||||||| || |||||||||||| ||||||| ||||||||| | |||||||||||||||||||||||| ||| | || | |
|
|
| T |
40204135 |
caattgaaaggtcaaattgtttccatagaagtggtggaaaagatccatgtcacatgaatagcaatatttacatgatttcatttggtgcagtgcaaattat |
40204234 |
T |
|
| Q |
120 |
tttctctcaaattcctgactttgatcagttatggtggctctc |
161 |
Q |
| |
|
|||||||||||||| || |||||||| ||||||||||||| |
|
|
| T |
40204235 |
attctctcaaattccagattttgatcaaatatggtggctctc |
40204276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 40208268 - 40208409
Alignment:
| Q |
20 |
caattaaaaggtctaattgtttccacagcagtggtggaaaaaatccatgccacatgaatggaaatatttacatgatttcatttggtattgtggagatctt |
119 |
Q |
| |
|
||||| ||||||| ||||||||||| || |||||||||||| ||||||| |||||||| | |||||||||||||||||||||||| ||| | || | |
|
|
| T |
40208268 |
caattgaaaggtcaaattgtttccatagaagtggtggaaaagatccatgtcacatgaaaagcaatatttacatgatttcatttggtgcagtgcaaattat |
40208367 |
T |
|
| Q |
120 |
tttctctcaaattcctgactttgatcagttatggtggctctc |
161 |
Q |
| |
|
|||||||||||||| || |||||||| || ||||||||||| |
|
|
| T |
40208368 |
attctctcaaattccagattttgatcaattgtggtggctctc |
40208409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 40200634 - 40200775
Alignment:
| Q |
20 |
caattaaaaggtctaattgtttccacagcagtggtggaaaaaatccatgccacatgaatggaaatatttacatgatttcatttggtattgtggagatctt |
119 |
Q |
| |
|
||||| ||||||| ||||||||||| || ||||| |||||| ||||||| |||||||| | |||||||||||||||||||||||| || | || | |
|
|
| T |
40200634 |
caattgaaaggtcaaattgtttccatagaagtgggggaaaagatccatgtcacatgaacagcaatatttacatgatttcatttggtgcagtacaaattat |
40200733 |
T |
|
| Q |
120 |
tttctctcaaattcctgactttgatcagttatggtggctctc |
161 |
Q |
| |
|
|||||||||||||| || |||||||| |||||||||||||| |
|
|
| T |
40200734 |
attctctcaaattccagattttgatcaattatggtggctctc |
40200775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University