View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0350_high_2 (Length: 392)

Name: NF0350_high_2
Description: NF0350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0350_high_2
NF0350_high_2
[»] chr4 (4 HSPs)
chr4 (13-217)||(33550250-33550454)
chr4 (13-217)||(26230624-26230829)
chr4 (297-371)||(26230909-26230983)
chr4 (297-371)||(33550533-33550607)
[»] chr7 (2 HSPs)
chr7 (13-217)||(8335378-8335582)
chr7 (297-371)||(8335224-8335298)
[»] chr2 (2 HSPs)
chr2 (78-217)||(4684810-4684949)
chr2 (297-371)||(4684656-4684730)
[»] chr8 (1 HSPs)
chr8 (13-91)||(26632567-26632645)


Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 33550250 - 33550454
Alignment:
Q  13 aatatcatcattttccagacaatgttgacattatttttggatactacggaaataatctttttaaagttataatgttcagggaagtattttgcgctactaa 112  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33550250 aatatcatcattttccaaacaatgttgacattatttttggatactacggaaataatctttttaaagttataatgttcagggaagtattttgcgctactaa 33550349  T
Q  113 aataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttaaacactccaatcaaggtacgt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33550350 aataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttaaacactccaatcaaggtacgt 33550449  T
Q  213 tatca 217  Q
    |||||    
T  33550450 tatca 33550454  T

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Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 26230624 - 26230829
Alignment:
Q  13 aatatcatcattttccagacaatgttgacattatttttggatactacggaaataat-ctttttaaagttataatgttcagggaagtattttgcgctacta 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26230624 aatatcatcattttccagacaatgttgacattatttttggatactacggaaataattctttttaaagttataatgttcagggaagtattttgcgctacta 26230723  T
Q  112 aaataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttaaacactccaatcaaggtacg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26230724 aaataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttaaacactccaatcaaggtacg 26230823  T
Q  212 ttatca 217  Q
    ||||||    
T  26230824 ttatca 26230829  T

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Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 297 - 371
Target Start/End: Original strand, 26230909 - 26230983
Alignment:
Q  297 agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttgtgatgatg 371  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26230909 agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttgtgatgatg 26230983  T

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Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 297 - 371
Target Start/End: Original strand, 33550533 - 33550607
Alignment:
Q  297 agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttgtgatgatg 371  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33550533 agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttgtgatgatg 33550607  T

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Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 13 - 217
Target Start/End: Complemental strand, 8335582 - 8335378
Alignment:
Q  13 aatatcatcattttccagacaatgttgacattatttttggatactacggaaataatctttttaaagttataatgttcagggaagtattttgcgctactaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8335582 aatatcatcattttccagacaatgttgacattatttttggatactatggaaataatctttttaaagttataatgttcagggaagttttttgcgctactaa 8335483  T
Q  113 aataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttaaacactccaatcaaggtacgt 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |    
T  8335482 aataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttcaacactccaatcaaggtacat 8335383  T
Q  213 tatca 217  Q
    |||||    
T  8335382 tatca 8335378  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 297 - 371
Target Start/End: Complemental strand, 8335298 - 8335224
Alignment:
Q  297 agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttgtgatgatg 371  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8335298 agatgttgcccgatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgctgtgatgatg 8335224  T

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Target: chr2 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 78 - 217
Target Start/End: Complemental strand, 4684949 - 4684810
Alignment:
Q  78 gttataatgttcagggaagtattttgcgctactaaaataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacattt 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4684949 gttataatgttcagggaagtattttgcgctactaaaataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacattt 4684850  T
Q  178 ctgataatgatttaaacactccaatcaaggtacgttatca 217  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  4684849 ctgataatgatttaaacactccaatcaaggtacgttatca 4684810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 297 - 371
Target Start/End: Complemental strand, 4684730 - 4684656
Alignment:
Q  297 agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttgtgatgatg 371  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4684730 agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttgtgatgatg 4684656  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 26632567 - 26632645
Alignment:
Q  13 aatatcatcattttccagacaatgttgacattatttttggatactacggaaataatctttttaaagttataatgttcag 91  Q
    |||||||||||||| | || |||||||||||| |||||||||| ||   ||||||||||||||||||||||||||||||    
T  26632567 aatatcatcatttttccgataatgttgacattctttttggataatataaaaataatctttttaaagttataatgttcag 26632645  T

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