View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0350_low_1 (Length: 477)

Name: NF0350_low_1
Description: NF0350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0350_low_1
NF0350_low_1
[»] chr7 (1 HSPs)
chr7 (28-475)||(11849533-11849980)
[»] chr4 (1 HSPs)
chr4 (28-475)||(5876207-5876640)
[»] chr5 (2 HSPs)
chr5 (253-475)||(26554106-26554328)
chr5 (45-134)||(26554438-26554527)
[»] scaffold0617 (2 HSPs)
scaffold0617 (33-108)||(1606-1681)
scaffold0617 (33-108)||(7050-7125)
[»] chr3 (1 HSPs)
chr3 (33-108)||(14246301-14246376)


Alignment Details
Target: chr7 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 28 - 475
Target Start/End: Complemental strand, 11849980 - 11849533
Alignment:
Q  28 catcatcagcaaccatcatcattgcattcaaattatcttcatcagataagccttcaccagtttcataatctgccatccatgaaggtgtttttcttaccct 127  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11849980 catcttcagcaaccatcatcattgcattcaaattatcttcatcagataagccttcaccagtttcataatctgccatccatgaaggtgtttttcttaccct 11849881  T
Q  128 cccttcaacgacattgggtgagtcatcctaatgagattcactagacgatgaattagattcatcattgttattgttattatcattgctagcatcattgttg 227  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11849880 cccttcaacgacattgggtgagtcatcctcatgagattcactagacgatgaattagattcatcattgttattgttattatcattgctagcatcattgttg 11849781  T
Q  228 cctccttcttcatttccctctactccttcaatgtcaatctcataatcatttttccactctaaaagatctggcctacattcatctttttggttgtcccagt 327  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  11849780 cctccttcttcatttccctctactccttcaatgtcaatctcataatcatttttccactctaaaagatctggcctgcattcatctttttggttgttccagt 11849681  T
Q  328 tccaacatacatcttcttcaaaaatcacatccttattaatgattactttcttggaaactggatcatatagtttgtaggccctttattcgtcacttacgcc 427  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||    
T  11849680 tccaacatacatcttcttcaaaaatcacatccttactaatgattactttcttggaaactggatcatatagtttgtaggcctttgattcgtcacttactcc 11849581  T
Q  428 cagcaaaacccatttcttgctcttatcatctaacttgcttcttctctg 475  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  11849580 cagcaaaacacatttcttgctcttatcatctaacttgcttcttttctg 11849533  T

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Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 28 - 475
Target Start/End: Complemental strand, 5876640 - 5876207
Alignment:
Q  28 catcatcagcaaccatcatcattgcattcaaattatcttcatcagataagccttcaccagtttcataatctgccatccatgaaggtgtttttcttaccct 127  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  5876640 catcttcagcaaccatcatcattgcattcaaattatcttcatcagataagccttcaccagtttcataatatgccatccatgaaggtttttttcttaccct 5876541  T
Q  128 cccttcaacgacattgggtgagtcatcctaatgagattcactagacgatgaattagattcatcattgttattgttattatcattgctagcatcattgttg 227  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5876540 cccttcaacgacattgggtgagtcatcctcatgagattcactagacgatgaattagattcatcattgttattgttattatcattgctagcatcattgttg 5876441  T
Q  228 cctccttcttcatttccctctactccttcaatgtcaatctcataatcatttttccactctaaaagatctggcctacattcatctttttggttgtcccagt 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||              |||| |||||||||||||||||||||||||    
T  5876440 cctccttcttcatttccctctactccttcaatgtcaatctcataatcatttttcca--------------gcctgcattcatctttttggttgtcccagt 5876355  T
Q  328 tccaacatacatcttcttcaaaaatcacatccttattaatgattactttcttggaaactggatcatatagtttgtaggccctttattcgtcacttacgcc 427  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||    
T  5876354 tccaacatacatcttcttcaaaaatcacatccttactaatgattactttcttggaaactggatcatatagtttgtaggcctttgattcgtcacttactcc 5876255  T
Q  428 cagcaaaacccatttcttgctcttatcatctaacttgcttcttctctg 475  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  5876254 cagcaaaacacatttcttgctcttatcatctaacttgcttcttttctg 5876207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 253 - 475
Target Start/End: Complemental strand, 26554328 - 26554106
Alignment:
Q  253 cttcaatgtcaatctcataatcatttttccactctaaaagatctggcctacattcatctttttggttgtcccagttccaacatacatcttcttcaaaaat 352  Q
    ||||||||||| ||||  ||||||||||  ||||||||| |||  | |||||||| |||||     ||||||| ||||| ||| ||||||||||||||||    
T  26554328 cttcaatgtcattctcggaatcatttttgaactctaaaacatccagactacattcctctttgcttctgtcccaattccagcattcatcttcttcaaaaat 26554229  T
Q  353 cacatccttattaatgattactttcttggaaactggatcatatagtttgtaggccctttattcgtcacttacgcccagcaaaacccatttcttgctctta 452  Q
    |||||| ||  ||||||||| ||||||||||| |||||||||||   |||||||| || |||| |||||||| |||| |||||| ||||||||||||||     
T  26554228 cacatctttgctaatgattattttcttggaaattggatcatataacctgtaggcctttgattcatcacttactcccaacaaaacacatttcttgctcttg 26554129  T
Q  453 tcatctaacttgcttcttctctg 475  Q
    ||||||| ||| |||||| ||||    
T  26554128 tcatctagcttacttcttttctg 26554106  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 45 - 134
Target Start/End: Complemental strand, 26554527 - 26554438
Alignment:
Q  45 atcattgcattcaaattatcttcatcagataagccttcaccagtttcataatctgccatccatgaaggtgtttttcttaccctcccttca 134  Q
    ||||||||||||| |  ||||||||| || || |||||||| |||||||| ||| |||||||  | |||| | |||||||||||||||||    
T  26554527 atcattgcattcataccatcttcatctgacaaaccttcacctgtttcatagtcttccatccaacacggtggtcttcttaccctcccttca 26554438  T

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Target: scaffold0617 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0617
Description:

Target: scaffold0617; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 1606 - 1681
Alignment:
Q  33 tcagcaaccatcatcattgcattcaaattatcttcatcagataagccttcaccagtttcataatctgccatccatg 108  Q
    |||| ||||||||||||||| |||| ||| || |||||||| |  ||||| || ||||||||||||| ||||||||    
T  1606 tcagtaaccatcatcattgcgttcagattttcatcatcagagagaccttcccctgtttcataatctgtcatccatg 1681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0617; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 7050 - 7125
Alignment:
Q  33 tcagcaaccatcatcattgcattcaaattatcttcatcagataagccttcaccagtttcataatctgccatccatg 108  Q
    |||| ||||||||||||||| |||| ||| || |||||||| |  ||||| || ||||||||||||| ||||||||    
T  7050 tcagtaaccatcatcattgcgttcagattttcatcatcagagagaccttcccctgtttcataatctgtcatccatg 7125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 108
Target Start/End: Complemental strand, 14246376 - 14246301
Alignment:
Q  33 tcagcaaccatcatcattgcattcaaattatcttcatcagataagccttcaccagtttcataatctgccatccatg 108  Q
    |||| ||||||||||||||| |||| ||| || |||||||| |  ||||| || ||||||||||||| ||||||||    
T  14246376 tcagtaaccatcatcattgcgttcagattttcatcatcagagagaccttcccctgtttcataatctgtcatccatg 14246301  T

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