View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0350_low_11 (Length: 304)
Name: NF0350_low_11
Description: NF0350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0350_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 2410831 - 2411105
Alignment:
| Q |
1 |
cttcgatcttctcgtagaaatcgtcgtcaatttctatttcctcttcttcaattataggcaagaatcgattttctgacattattttgttaacaaaagaaaa |
100 |
Q |
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| T |
2410831 |
cttcgatcttctcgtagaaatcgtcgtcaatttctatttcctcttcttcaattataggcaagaatcgattttctgacattattttgttaaga-------- |
2410922 |
T |
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| Q |
101 |
gtgttacagtaacacagtgttgtttttgttttggtgtttgtaacaacaagtttagattgttcgaagaattttaaagtcccgtgtaactagccgttacgat |
200 |
Q |
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| T |
2410923 |
gcgttacagtaacacagtgttgtttttgttttggtgtt-gtaacaacaagtttagattgttcgaagaattttaaagtcccgtgtaactagccgttacgat |
2411021 |
T |
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| Q |
201 |
tcagacaggctggtagtaagagaataaaagaaacggtattcaagggttcttttcgtcatttcgaggttgaaattgggcttgaggttgg |
288 |
Q |
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| T |
2411022 |
tcagacaggctg---gtaagagaataaaagaaacggtattcaagggttcttttcgtcatttcga-gttcaaattgggcttgaggttgg |
2411105 |
T |
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