View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0350_low_18 (Length: 251)

Name: NF0350_low_18
Description: NF0350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0350_low_18
NF0350_low_18
[»] chr2 (4 HSPs)
chr2 (1-244)||(13448017-13448260)
chr2 (65-244)||(13454552-13454731)
chr2 (66-244)||(13439919-13440097)
chr2 (1-66)||(13454506-13454571)
[»] chr5 (2 HSPs)
chr5 (67-244)||(28385054-28385231)
chr5 (75-242)||(12540413-12540580)
[»] chr4 (5 HSPs)
chr4 (68-237)||(48965050-48965219)
chr4 (67-241)||(48967178-48967352)
chr4 (67-231)||(48961011-48961175)
chr4 (79-238)||(48957876-48958035)
chr4 (125-212)||(48912659-48912746)
[»] chr8 (1 HSPs)
chr8 (66-236)||(12641771-12641941)
[»] chr7 (1 HSPs)
chr7 (78-244)||(3417809-3417975)
[»] chr6 (1 HSPs)
chr6 (101-240)||(12590455-12590594)
[»] scaffold0536 (2 HSPs)
scaffold0536 (185-237)||(6800-6852)
scaffold0536 (188-240)||(1739-1791)


Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 13448017 - 13448260
Alignment:
Q  1 ttgaaaaaatttagacaatactcatttgaattaatcatccagcttgaggtctctcaatcttttaaggtctctcgatcttttaagttcgtcaatcaaagcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13448017 ttgaaaaaatttagacaatactcatttgaattaatcatccagcttgaggtctctcaatcttttaaggtctctcgatcttttaagttcgtcaatcaaagcc 13448116  T
Q  101 aacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcgagcatgtagcctgatattttcagcttcatcaccac 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13448117 aacaaattattataagacgagccaccttcttgaatagcttgtatagctttttctccaaactctcgagcacgtagcctgatattttcagcttcatcaccac 13448216  T
Q  201 cgtccatcaatctccttacagccttctctatgctatctctgctc 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  13448217 cgtccatcaatctccttacagccttctctatgctatctctgctc 13448260  T

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Target: chr2; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 65 - 244
Target Start/End: Original strand, 13454552 - 13454731
Alignment:
Q  65 aggtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctc 164  Q
    |||| |||| ||||||||||||| ||||||||||||||||||||||||||||| ||||| |||| ||||||||||||| |||| ||||||||||||||||    
T  13454552 aggtttctcaatcttttaagttcatcaatcaaagccaacaaattattataagatgagccacctttttgaatagcttgtgtagccttttctccaaactctc 13454651  T
Q  165 gagcatgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctgctc 244  Q
    ||||| ||| ||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||    
T  13454652 gagcacgtaccctgatatttttagcttcatcaccaccgcccatcaatctcctcacagccttctctatgctatctttgctc 13454731  T

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Target: chr2; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 66 - 244
Target Start/End: Original strand, 13439919 - 13440097
Alignment:
Q  66 ggtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcg 165  Q
    |||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||| |    
T  13439919 ggtctctcaatcttttaagttcttcaattaaagccaacaaattattataagacgagccaccttcttgaatagcttgtgtagccttttctccaaactcttg 13440018  T
Q  166 agcatgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctgctc 244  Q
    |||| ||||||| ||||||| |||||||||||||   |||||||||||||| ||||||||||||||| |||| ||||||    
T  13440019 agcaagtagcctcatatttttagcttcatcaccattctccatcaatctcctcacagccttctctatgttatccctgctc 13440097  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 13454506 - 13454571
Alignment:
Q  1 ttgaaaaaatttagacaatactcatttgaattaatcatccagcttgaggtctctcaatcttttaag 66  Q
    ||||||||| ||| ||||| ||| |||||||||||||| | ||||||||| |||||||||||||||    
T  13454506 ttgaaaaaacttacacaatgctcctttgaattaatcatgcggcttgaggtttctcaatcttttaag 13454571  T

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Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 67 - 244
Target Start/End: Original strand, 28385054 - 28385231
Alignment:
Q  67 gtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcga 166  Q
    ||||||| |||||||||||||||| || ||||| ||||||||||||||||| || || ||||||| || |||| || |||| || ||||| |||||||||    
T  28385054 gtctctcaatcttttaagttcgtcgattaaagctaacaaattattataagaggaaccaccttctttaacagctcgtgtagccttctctcctaactctcga 28385153  T
Q  167 gcatgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctgctc 244  Q
    ||| || | || ||||||||||||||||| ||||||||||||||| |||| | ||||||||||||| |||||||||||    
T  28385154 gcacgttgtctcatattttcagcttcatcgccaccgtccatcaatttcctcatagccttctctatgttatctctgctc 28385231  T

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Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 75 - 242
Target Start/End: Original strand, 12540413 - 12540580
Alignment:
Q  75 atcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcgagcatgtag 174  Q
    ||||||||| |||||| |||||||  ||||||||||||| ||| || || |||||||||| |||| || |||| || ||||||| |||||| ||| ||||    
T  12540413 atcttttaatttcgtcgatcaaagataacaaattattatgagaggaaccaccttcttgaacagctcgtctagccttctctccaatctctcgtgcacgtag 12540512  T
Q  175 cctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctgc 242  Q
     || |||||||||||||||| |||||| |||||||||||||| | |||||||||||||| ||||||||    
T  12540513 tctcatattttcagcttcataaccaccatccatcaatctcctcatagccttctctatgccatctctgc 12540580  T

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Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 68 - 237
Target Start/End: Original strand, 48965050 - 48965219
Alignment:
Q  68 tctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcgag 167  Q
    |||||| ||||||| || || |||||||| || |||||||| |||| ||||||||| ||||||||||| ||| || |||| ||||||||||||||| |||    
T  48965050 tctctcaatcttttgagatcatcaatcaaggctaacaaattcttatgagacgagccaccttcttgaatggctcgtctagccttttctccaaactcttgag 48965149  T
Q  168 catgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatc 237  Q
    || |    || || || |||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  48965150 cacgacttctaattttctcagcttcatcaccactgtccatcaatctcctcacagccttctctatgctatc 48965219  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 67 - 241
Target Start/End: Original strand, 48967178 - 48967352
Alignment:
Q  67 gtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcga 166  Q
    |||||||  ||||||||| || ||||||||||| |  ||||||||||||||| |||| ||||||||||  ||| || |||| ||||||||||| ||||||    
T  48967178 gtctctcattcttttaagatcatcaatcaaagcaagtaaattattataagacaagccaccttcttgaagtgctcgtgtagccttttctccaaagtctcga 48967277  T
Q  167 gcatgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctg 241  Q
    ||| || | ||||| || |||||||||||  ||  |||||||||||| |||| ||| ||||||||| ||||||||    
T  48967278 gcacgttgtctgatcttctcagcttcatcgtcattgtccatcaatcttcttatagctttctctatgttatctctg 48967352  T

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Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 67 - 231
Target Start/End: Original strand, 48961011 - 48961175
Alignment:
Q  67 gtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcga 166  Q
    ||||||| |||||||||| || ||||| ||||||||||||||||||| ||| ||||| ||| |||||| ||||  |||||| || || ||||||||||||    
T  48961011 gtctctcaatcttttaagatcatcaattaaagccaacaaattattatgagatgagccgcctacttgaacagctcatatagccttatccccaaactctcga 48961110  T
Q  167 gcatgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctat 231  Q
    ||| |  | || |||| ||| |||||||||||||||||||| ||| | || || |||||||||||    
T  48961111 gcacgccgtcttatatcttcggcttcatcaccaccgtccattaattttctcactgccttctctat 48961175  T

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Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 79 - 238
Target Start/End: Original strand, 48957876 - 48958035
Alignment:
Q  79 tttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcgagcatgtagcctg 178  Q
    |||||| || |||||||||| ||||||||| |||| ||| || || |||||||||| |||| || |||| |||||||| |||||| ||||| |  |  ||    
T  48957876 tttaagatcatcaatcaaagacaacaaattgttatgagatgatccaccttcttgaacagctcgtgtagccttttctccgaactcttgagcacgctgtttg 48957975  T
Q  179 atattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatct 238  Q
    || |  |||||||||||||||||||||||||||||| | |||||||| ||||| ||||||    
T  48957976 atttcctcagcttcatcaccaccgtccatcaatctcttcacagccttttctatactatct 48958035  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 125 - 212
Target Start/End: Complemental strand, 48912746 - 48912659
Alignment:
Q  125 ccttcttgaatagcttgtatagctttttctccaaactctcgagcatgtagcctgatattttcagcttcatcaccaccgtccatcaatc 212  Q
    ||||||| ||| || ||| ||||||| || |||||||||||||||||| | ||||| || |||||||||||||||| |||||||||||    
T  48912746 ccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatc 48912659  T

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Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 66 - 236
Target Start/End: Complemental strand, 12641941 - 12641771
Alignment:
Q  66 ggtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcg 165  Q
    ||||||||||||||||||| |||| |||||||||||||||||| |||| |||||| || ||||||| || ||| ||| |||| ||||  ||||||||| |    
T  12641941 ggtctctcgatcttttaagatcgttaatcaaagccaacaaattgttatgagacgacccgccttcttcaacagcatgtgtagcctttttcccaaactcttg 12641842  T
Q  166 agcatgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctat 236  Q
    |||| || | ||||| |  | ||||||||||||| |||||||||||||||| ||||| |||||||| ||||    
T  12641841 agcacgttgtctgatttccttagcttcatcaccatcgtccatcaatctcctcacagctttctctatactat 12641771  T

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Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 78 - 244
Target Start/End: Complemental strand, 3417975 - 3417809
Alignment:
Q  78 ttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcgagcatgtagcct 177  Q
    ||||||||||||| |||||||  |||||||||| ||  || || || ||||||||||||||| || |||| || ||||||| |||||||||| |||| ||    
T  3417975 ttttaagttcgtcgatcaaagttaacaaattatgatgtgaggaaccaccttcttgaatagctcgtttagccttctctccaagctctcgagcacgtagtct 3417876  T
Q  178 gatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctgctc 244  Q
     |||  |||||| ||||||| || ||||||||||||||| |  ||||||||||||  ||||||||||    
T  3417875 cataccttcagcctcatcactactgtccatcaatctcctcattgccttctctatgtcatctctgctc 3417809  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 240
Target Start/End: Complemental strand, 12590594 - 12590455
Alignment:
Q  101 aacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcgagcatgtagcctgatattttcagcttcatcaccac 200  Q
    ||||||||||||| ||| ||||| |||| ||||| |||| || |||||||||| || |||||| ||  | || | ||||| |  |||||||||   ||||    
T  12590594 aacaaattattattagaggagccaccttgttgaacagctagtctagctttttcccctaactcttgactacgtcgtctgatttcctcagcttcaatgccac 12590495  T
Q  201 cgtccatcaatctccttacagccttctctatgctatctct 240  Q
    | ||||||||||| || ||||| |||| ||||||||||||    
T  12590494 catccatcaatcttctcacagcattctttatgctatctct 12590455  T

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Target: scaffold0536 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 6852 - 6800
Alignment:
Q  185 tcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatc 237  Q
    |||||||| |||||||| |||||||||||||| ||||||||||| || |||||    
T  6852 tcagcttcgtcaccaccatccatcaatctcctcacagccttctcaatactatc 6800  T

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Target: scaffold0536; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 1791 - 1739
Alignment:
Q  188 gcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctct 240  Q
    ||||||||||||| ||||||||| ||||||| |||||||| ||| | ||||||    
T  1791 gcttcatcaccactgtccatcaacctccttaaagccttctttatacgatctct 1739  T

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