View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0350_low_19 (Length: 250)
Name: NF0350_low_19
Description: NF0350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0350_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 13447809 - 13447615
Alignment:
| Q |
1 |
aatttttggtgtgtacgtggctattctaacttcttaatgtgtttttgcatttattttaatttttcaactgcgagagtgtttatgtcaacacttctgtcag |
100 |
Q |
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| T |
13447809 |
aatttttggtgtgtacgtggctattctaacttcttaatgtgtttttgcatttattttaatttttcaactgcgagagtgtttatgtcaacacttctgtcag |
13447710 |
T |
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| Q |
101 |
tctgacattgctgttgtttacagtcgaatgaaatggaagaatcctgtaaagctggtttctgtactttaaatctctagattttgtgggatcctgtc |
195 |
Q |
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| T |
13447709 |
tctgacattgccgttgtttacagtcgaatgaaatggaagaatcctgtaaagctggttcctgtactttaaatctctagattttgtgggatcctgtc |
13447615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 13454249 - 13454185
Alignment:
| Q |
4 |
ttttggtgtgtacgtggctattctaacttcttaatgtgtttttgcatttatttt-aatttttcaa |
67 |
Q |
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||||| ||||||||||| | |||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
13454249 |
ttttgttgtgtacgtggttcttctaacttcttaatgtgttttcgcatttattttcaatttttcaa |
13454185 |
T |
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