View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0350_low_22 (Length: 248)
Name: NF0350_low_22
Description: NF0350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0350_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 10299293 - 10299439
Alignment:
| Q |
16 |
gagcagagagccaccataactgatcaaagtcaggaatttgagagaaaaagatctccacaataccaaatgaaatcatgtaaatatttccattcatgtggca |
115 |
Q |
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| T |
10299293 |
gagcagagagccaccataactgatcaaagtcaggaatttgagagaaaaagatctccacaataccaaatgaaatcatgtaaatgtttccattcatgtggca |
10299392 |
T |
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| Q |
116 |
tggattttttccaccactgctgtggaaacaattagaccttttaattg |
162 |
Q |
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| T |
10299393 |
tggattttttccaccactgctgtggaaacaattagaccttttaattg |
10299439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 21 - 162
Target Start/End: Complemental strand, 40204276 - 40204135
Alignment:
| Q |
21 |
gagagccaccataactgatcaaagtcaggaatttgagagaaaaagatctccacaataccaaatgaaatcatgtaaatatttccattcatgtggcatggat |
120 |
Q |
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| T |
40204276 |
gagagccaccatatttgatcaaaatctggaatttgagagaatataatttgcactgcaccaaatgaaatcatgtaaatattgctattcatgtgacatggat |
40204177 |
T |
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| Q |
121 |
tttttccaccactgctgtggaaacaattagaccttttaattg |
162 |
Q |
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| T |
40204176 |
cttttccaccacttctatggaaacaatttgacctttcaattg |
40204135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 162
Target Start/End: Complemental strand, 40208409 - 40208268
Alignment:
| Q |
21 |
gagagccaccataactgatcaaagtcaggaatttgagagaaaaagatctccacaataccaaatgaaatcatgtaaatatttccattcatgtggcatggat |
120 |
Q |
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| T |
40208409 |
gagagccaccacaattgatcaaaatctggaatttgagagaatataatttgcactgcaccaaatgaaatcatgtaaatattgcttttcatgtgacatggat |
40208310 |
T |
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| Q |
121 |
tttttccaccactgctgtggaaacaattagaccttttaattg |
162 |
Q |
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| T |
40208309 |
cttttccaccacttctatggaaacaatttgacctttcaattg |
40208268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 162
Target Start/End: Complemental strand, 40200775 - 40200634
Alignment:
| Q |
21 |
gagagccaccataactgatcaaagtcaggaatttgagagaaaaagatctccacaataccaaatgaaatcatgtaaatatttccattcatgtggcatggat |
120 |
Q |
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| T |
40200775 |
gagagccaccataattgatcaaaatctggaatttgagagaatataatttgtactgcaccaaatgaaatcatgtaaatattgctgttcatgtgacatggat |
40200676 |
T |
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| Q |
121 |
tttttccaccactgctgtggaaacaattagaccttttaattg |
162 |
Q |
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| T |
40200675 |
cttttcccccacttctatggaaacaatttgacctttcaattg |
40200634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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