View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0350_low_3 (Length: 466)
Name: NF0350_low_3
Description: NF0350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0350_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 161 - 460
Target Start/End: Original strand, 56277805 - 56278104
Alignment:
| Q |
161 |
gatgaatcgttctacttcacatttgaagtgtactcctcagaaaccaaagcttggaagaaatccaatgagatatgcgactgtaattatgttttgattaaaa |
260 |
Q |
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| T |
56277805 |
gatgaatcgttctacttcacatttgaagtgtactcctcagaaaccaaagcttggaagaaatccaatgagacatgcgactgtaattatggtttgattaaaa |
56277904 |
T |
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| Q |
261 |
acaaagggttatacataggaggtgtcttgcattggcttacagaaggtgatcaaatcatcaccttcaatcttgaaaaggaactgtctttgatgatttcagt |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
56277905 |
acaaagggttatacataggaggtgtcttgcattggcttacagaaggtgatcaaatcatcacctttaatgttgaaaaggaactgtctttgatgatttcagt |
56278004 |
T |
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| Q |
361 |
acctgttcctgcatgtgagtttaggaccgtccctcaagcttgcattggagaatatgaaggaaggcttcattatgttcaggtatcagaacaaggtcttcat |
460 |
Q |
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| T |
56278005 |
acctgttccggcatgtgagtttaggaccgtccctcaagcttgcattggagaatatgaaggaaggcttcattatgttcaggtatcagaacaaggtcttcat |
56278104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 40280785 - 40280830
Alignment:
| Q |
8 |
cagcagagaggtgcgtggtagatgttaatcgtgtgtattcagatgg |
53 |
Q |
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| T |
40280785 |
cagcagagaggtgcgtggtagatgttaatggtgtgtattcagatgg |
40280830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 40280613 - 40280654
Alignment:
| Q |
8 |
cagcagagaggtgcgtggtagatgttaatcgtgtgtattcag |
49 |
Q |
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| T |
40280613 |
cagcagagaggtgcgtggtagatgttaatggtgtgtattcag |
40280654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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