View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0350_low_37 (Length: 228)

Name: NF0350_low_37
Description: NF0350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0350_low_37
NF0350_low_37
[»] chr5 (1 HSPs)
chr5 (25-122)||(42010321-42010418)
[»] chr3 (1 HSPs)
chr3 (25-122)||(1245659-1245756)
[»] chr4 (4 HSPs)
chr4 (127-228)||(3762512-3762613)
chr4 (133-228)||(3745722-3745817)
chr4 (133-228)||(3776599-3776694)
chr4 (133-228)||(3780912-3781007)


Alignment Details
Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 25 - 122
Target Start/End: Complemental strand, 42010418 - 42010321
Alignment:
25 gcttttgaatcttgtaaagctgaggagataaacgtgatgaagacgatgatgatgacgacattggtgtttcagccaatactcgagccacaggttctgct 122  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
42010418 gcttttgaatcttgtaaagccgaggagataaacgtgatgaagacgatgatgatgacggcattggtgtttcagccaatactcgagccacagtttctgct 42010321  T

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Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 25 - 122
Target Start/End: Complemental strand, 1245756 - 1245659
Alignment:
25 gcttttgaatcttgtaaagctgaggagataaacgtgatgaagacgatgatgatgacgacattggtgtttcagccaatactcgagccacaggttctgct 122  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||| |||||||    
1245756 gcttttgaatcttgtaaagccgaggagataaacgtgatgaagacgataaagatgacggcattggtgtttcagccaatactcgagccacagtttctgct 1245659  T

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Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 3762512 - 3762613
Alignment:
127 cactgtcaccaacaacaggcatatccctaaccttactaagagctggattcctcaccaaaatactaatagtacttctattatactttccttcaatcaaagc 226  Q
    ||||| |||||||||||||||| |||||||||||| ||||||||||||||||| |||| ||| |||||||||| | |||||||||||||||||| |||||    
3762512 cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtactaccattatactttccttcaatgaaagc 3762611  T
227 aa 228  Q
    ||    
3762612 aa 3762613  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 228
Target Start/End: Original strand, 3745722 - 3745817
Alignment:
133 caccaacaacaggcatatccctaaccttactaagagctggattcctcaccaaaatactaatagtacttctattatactttccttcaatcaaagcaa 228  Q
    ||||||||| |||||| |||||||||||| ||||||| | ||| ||| |||| ||| |||||||||| | |||||||||||||||||| |||||||    
3745722 caccaacaataggcatttccctaaccttattaagagcagaatttctccccaagatagtaatagtactcccattatactttccttcaatgaaagcaa 3745817  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 228
Target Start/End: Original strand, 3776599 - 3776694
Alignment:
133 caccaacaacaggcatatccctaaccttactaagagctggattcctcaccaaaatactaatagtacttctattatactttccttcaatcaaagcaa 228  Q
    |||||||||||||||| |||||||||||| || ||||  |||||||| |||| ||| |||| ||||| | |||||||||||||||||| |||||||    
3776599 caccaacaacaggcatttccctaaccttattacgagcatgattcctccccaagatagtaatggtactaccattatactttccttcaatgaaagcaa 3776694  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 228
Target Start/End: Original strand, 3780912 - 3781007
Alignment:
133 caccaacaacaggcatatccctaaccttactaagagctggattcctcaccaaaatactaatagtacttctattatactttccttcaatcaaagcaa 228  Q
    |||||||||||||||| |||||||||  | |||  || ||||||||| | |  ||| ||| |||||| | |||||||||||||||||| |||||||    
3780912 caccaacaacaggcatctccctaaccaaattaatggcaggattcctccctacgatagtaagagtactaccattatactttccttcaatgaaagcaa 3781007  T

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