View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0350_low_37 (Length: 228)
Name: NF0350_low_37
Description: NF0350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF0350_low_37 |
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[»] chr4 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 25 - 122
Target Start/End: Complemental strand, 42010418 - 42010321
Alignment:
Q |
25 |
gcttttgaatcttgtaaagctgaggagataaacgtgatgaagacgatgatgatgacgacattggtgtttcagccaatactcgagccacaggttctgct |
122 |
Q |
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T |
42010418 |
gcttttgaatcttgtaaagccgaggagataaacgtgatgaagacgatgatgatgacggcattggtgtttcagccaatactcgagccacagtttctgct |
42010321 |
T |
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Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 25 - 122
Target Start/End: Complemental strand, 1245756 - 1245659
Alignment:
Q |
25 |
gcttttgaatcttgtaaagctgaggagataaacgtgatgaagacgatgatgatgacgacattggtgtttcagccaatactcgagccacaggttctgct |
122 |
Q |
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T |
1245756 |
gcttttgaatcttgtaaagccgaggagataaacgtgatgaagacgataaagatgacggcattggtgtttcagccaatactcgagccacagtttctgct |
1245659 |
T |
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Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 3762512 - 3762613
Alignment:
Q |
127 |
cactgtcaccaacaacaggcatatccctaaccttactaagagctggattcctcaccaaaatactaatagtacttctattatactttccttcaatcaaagc |
226 |
Q |
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T |
3762512 |
cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtactaccattatactttccttcaatgaaagc |
3762611 |
T |
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Q |
227 |
aa |
228 |
Q |
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T |
3762612 |
aa |
3762613 |
T |
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Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 228
Target Start/End: Original strand, 3745722 - 3745817
Alignment:
Q |
133 |
caccaacaacaggcatatccctaaccttactaagagctggattcctcaccaaaatactaatagtacttctattatactttccttcaatcaaagcaa |
228 |
Q |
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T |
3745722 |
caccaacaataggcatttccctaaccttattaagagcagaatttctccccaagatagtaatagtactcccattatactttccttcaatgaaagcaa |
3745817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 228
Target Start/End: Original strand, 3776599 - 3776694
Alignment:
Q |
133 |
caccaacaacaggcatatccctaaccttactaagagctggattcctcaccaaaatactaatagtacttctattatactttccttcaatcaaagcaa |
228 |
Q |
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T |
3776599 |
caccaacaacaggcatttccctaaccttattacgagcatgattcctccccaagatagtaatggtactaccattatactttccttcaatgaaagcaa |
3776694 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 228
Target Start/End: Original strand, 3780912 - 3781007
Alignment:
Q |
133 |
caccaacaacaggcatatccctaaccttactaagagctggattcctcaccaaaatactaatagtacttctattatactttccttcaatcaaagcaa |
228 |
Q |
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T |
3780912 |
caccaacaacaggcatctccctaaccaaattaatggcaggattcctccctacgatagtaagagtactaccattatactttccttcaatgaaagcaa |
3781007 |
T |
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