View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0350_low_39 (Length: 226)
Name: NF0350_low_39
Description: NF0350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0350_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 10299413 - 10299293
Alignment:
| Q |
1 |
agcagtggtggaaaaaatccatgccacatgaatggaaatatttacatgatttcatttggtattgtggagatctttttctctcaaattcctgactttgatc |
100 |
Q |
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| T |
10299413 |
agcagtggtggaaaaaatccatgccacatgaatggaaacatttacatgatttcatttggtattgtggagatctttttctctcaaattcctgactttgatc |
10299314 |
T |
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| Q |
101 |
agttatggtggctctctgctc |
121 |
Q |
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||||||||||||||||||||| |
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| T |
10299313 |
agttatggtggctctctgctc |
10299293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 3e-19; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 4 - 116
Target Start/End: Original strand, 40204164 - 40204276
Alignment:
| Q |
4 |
agtggtggaaaaaatccatgccacatgaatggaaatatttacatgatttcatttggtattgtggagatctttttctctcaaattcctgactttgatcagt |
103 |
Q |
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|||||||||||| ||||||| ||||||||| | |||||||||||||||||||||||| ||| | || | |||||||||||||| || |||||||| |
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| T |
40204164 |
agtggtggaaaagatccatgtcacatgaatagcaatatttacatgatttcatttggtgcagtgcaaattatattctctcaaattccagattttgatcaaa |
40204263 |
T |
|
| Q |
104 |
tatggtggctctc |
116 |
Q |
| |
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||||||||||||| |
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| T |
40204264 |
tatggtggctctc |
40204276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 116
Target Start/End: Original strand, 40208297 - 40208409
Alignment:
| Q |
4 |
agtggtggaaaaaatccatgccacatgaatggaaatatttacatgatttcatttggtattgtggagatctttttctctcaaattcctgactttgatcagt |
103 |
Q |
| |
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|||||||||||| ||||||| |||||||| | |||||||||||||||||||||||| ||| | || | |||||||||||||| || |||||||| | |
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| T |
40208297 |
agtggtggaaaagatccatgtcacatgaaaagcaatatttacatgatttcatttggtgcagtgcaaattatattctctcaaattccagattttgatcaat |
40208396 |
T |
|
| Q |
104 |
tatggtggctctc |
116 |
Q |
| |
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| ||||||||||| |
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| T |
40208397 |
tgtggtggctctc |
40208409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 116
Target Start/End: Original strand, 40200663 - 40200775
Alignment:
| Q |
4 |
agtggtggaaaaaatccatgccacatgaatggaaatatttacatgatttcatttggtattgtggagatctttttctctcaaattcctgactttgatcagt |
103 |
Q |
| |
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||||| |||||| ||||||| |||||||| | |||||||||||||||||||||||| || | || | |||||||||||||| || |||||||| | |
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| T |
40200663 |
agtgggggaaaagatccatgtcacatgaacagcaatatttacatgatttcatttggtgcagtacaaattatattctctcaaattccagattttgatcaat |
40200762 |
T |
|
| Q |
104 |
tatggtggctctc |
116 |
Q |
| |
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||||||||||||| |
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| T |
40200763 |
tatggtggctctc |
40200775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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