View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0350_low_5 (Length: 373)

Name: NF0350_low_5
Description: NF0350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0350_low_5
NF0350_low_5
[»] chr2 (1 HSPs)
chr2 (21-366)||(34876758-34877104)
[»] chr7 (1 HSPs)
chr7 (21-360)||(18365051-18365391)
[»] chr4 (3 HSPs)
chr4 (43-354)||(20596184-20596496)
chr4 (21-167)||(13046577-13046723)
chr4 (114-192)||(9651298-9651376)
[»] chr6 (2 HSPs)
chr6 (120-245)||(4228289-4228413)
chr6 (120-245)||(4172680-4172804)
[»] chr5 (3 HSPs)
chr5 (245-342)||(21299148-21299244)
chr5 (245-342)||(21304854-21304950)
chr5 (245-342)||(21312691-21312787)
[»] scaffold0028 (2 HSPs)
scaffold0028 (121-241)||(39114-39233)
scaffold0028 (252-342)||(38836-38925)
[»] chr1 (1 HSPs)
chr1 (237-342)||(16244950-16245055)
[»] chr3 (1 HSPs)
chr3 (299-354)||(19430137-19430192)


Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 21 - 366
Target Start/End: Original strand, 34876758 - 34877104
Alignment:
Q  21 acatcatcattattgaatcattatttaacaatcatcaccacaaaacaacgacttcgcctattttctcataattcaagtaaaagaattata-taacacacc 119  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  34876758 acatcatcattatcgaatcattatttaacaatcatcaccacaaaacaacgacttcacctattttctcataattcaagtaaaagaattataataacacacc 34876857  T
Q  120 atgataagcatcatgttcaacaactatcaatcattcattcgtcctcataaagtcatattaatctattcacaaagagacttacaagttattcggtcttaaa 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34876858 atgataagcatcatgttcaacaactatcaatcattcattcgtcctcataaagtcatattaatctattcacaaagagacttacaagttattcggtcttaaa 34876957  T
Q  220 aatcatttccaacaaagttcgtctatttggtaaaaatccccatttttcggttaactctacagtaacaaggaagaccaaatcatttgcctcaactatgcat 319  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  34876958 aatcattttcaacaaagtccgtctatttggtaaaaatccccattttccggttaactctaaagtaacaaggaagaccaaatcatttgcctcaactatgcat 34877057  T
Q  320 atacagtaatcaaatttatgtgcggtcgcatatacgtgttcatctca 366  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||    
T  34877058 atacagtaatcaaatttatgtgcggttgcatatacgtgttcgtctca 34877104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 21 - 360
Target Start/End: Complemental strand, 18365391 - 18365051
Alignment:
Q  21 acatcatcattattgaatcattatttaacaatcatcaccacaaaacaacgacttcgcctattttctcataattcaagtaaaagaattatataacacacca 120  Q
    |||| ||||||||  |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18365391 acattatcattatcaaatcattatttaacaatcatcatcataaaacaacgacttcgcctattttctcataattcaagtaaaagaattatataacacacca 18365292  T
Q  121 tgataagcatcatgttcaacaactatcaatcattcattcgtcctcataaagtcatattaatctattcacaaagagacttacaagttattcggtcttaaaa 220  Q
    || ||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||  ||||| ||||||||||| ||||||||||||||||||||    
T  18365291 tggtaaacatcatgttcaaaaactatcaatcattcattcatcctcataaagtcatattaacgtattcgcaaagagacttgcaagttattcggtcttaaaa 18365192  T
Q  221 atcatttccaacaaagttcgtctattt-ggtaaaaatccccatttttcggttaactctacagtaacaaggaagaccaaatcatttgcctcaactatgcat 319  Q
    ||||||||| |||| ||  || ||||| |||||||||||| |||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||    
T  18365191 atcatttccgacaaggtgtgtatatttcggtaaaaatcccaatttttcggttaactctaaagaaacaaggaagaccaactcatttgcctcaactatgcat 18365092  T
Q  320 atacagtaatcaaatttatgtgcggtcgcatatacgtgttc 360  Q
    ||||| ||||||  || |||||| || |||||||| |||||    
T  18365091 atacaataatcactttaatgtgcagttgcatatacatgttc 18365051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 4e-57; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 43 - 354
Target Start/End: Complemental strand, 20596496 - 20596184
Alignment:
Q  43 atttaacaatcatcaccacaaaacaacgacttcgcctattttctcataattcaagtaaaagaattatataacacaccatgataagcatcatgttcaacaa 142  Q
    |||||| ||||||||| ||||||||| ||| || |||||||| |||||||||||||||||||| |||||| || | |||||||| ||||||||||||||     
T  20596496 atttaataatcatcactacaaaacaatgacatcacctattttatcataattcaagtaaaagaagtatatatcatatcatgataaacatcatgttcaacac 20596397  T
Q  143 ctatcaatcattcattcgtcctcataaagtcatattaatctattcacaaagagacttacaagttattcggtcttaaaaatcatttccaacaaagttcgtc 242  Q
    ||||||| |||  |||| |||| || || ||||||||   ||||||||||||||||| || |||||  |||| ||||||||||||   ||||  ||||||    
T  20596396 ctatcaaccatcaattcatccttattaaatcatattatcttattcacaaagagacttgcaggttatctggtcataaaaatcatttttgacaagattcgtc 20596297  T
Q  243 tattt-ggtaaaaatccccatttttcggttaactctacagtaacaaggaagaccaaatcatttgcctcaactatgcatatacagtaatcaaatttatgtg 341  Q
    ||||| ||||||||| |  |||||||||||| ||||| || ||| |||  |||||| |||||| ||||||||||||||||||| |||||| |||| ||||    
T  20596296 tatttcggtaaaaattcatatttttcggttagctctaaagaaacgagggggaccaactcatttacctcaactatgcatatacaataatcatatttgtgtg 20596197  T
Q  342 cggtcgcatatac 354  Q
    | || ||||||||    
T  20596196 cagttgcatatac 20596184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 21 - 167
Target Start/End: Complemental strand, 13046723 - 13046577
Alignment:
Q  21 acatcatcattattgaatcattatttaacaatcatcaccacaaaacaacgacttcgcctattttctcataattcaagtaaaagaattatataacacacca 120  Q
    ||||||||| |||  ||| || |||||| | |||| || |||||||||||| ||| |||||||||||| ||||||| ||||||||||||||| || | ||    
T  13046723 acatcatcactatcaaattatcatttaatagtcattactacaaaacaacgagttcacctattttctcacaattcaaataaaagaattatatatcatatca 13046624  T
Q  121 tgataagcatcatgttcaacaactatcaatcattcattcgtcctcat 167  Q
    |||||| |||||| ||||||| |||| || |||  |||| |||||||    
T  13046623 tgataaacatcatattcaacacctataaaccatcaattcatcctcat 13046577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 192
Target Start/End: Original strand, 9651298 - 9651376
Alignment:
Q  114 cacaccatgataagcatcatgttcaacaactatcaatcattcattcgtcctcataaagtcatattaatctattcacaaa 192  Q
    |||| |||||||| |||||||||||||| |||| |||||||||| | || ||||| | |||||| || |||||||||||    
T  9651298 cacatcatgataaacatcatgttcaacacctattaatcattcatacatcttcatacaatcatatcaaactattcacaaa 9651376  T

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Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 120 - 245
Target Start/End: Complemental strand, 4228413 - 4228289
Alignment:
Q  120 atgataagcatcatgttcaacaactatcaatcattcattcgtcctcataaagtcatattaatctattcacaaagagacttacaagttattcggtcttaaa 219  Q
    ||||||| |||||| ||||||| ||||||||||||||| | |  ||||| | |||| | || ||||||||||| ||| || |||| ||||||||||||||    
T  4228413 atgataaacatcatattcaacacctatcaatcattcatacatattcatataatcatgtcaaactattcacaaa-agatttgcaagatattcggtcttaaa 4228315  T
Q  220 aatcatttccaacaaagttcgtctat 245  Q
     ||||||| | |||||||||||||||    
T  4228314 gatcattttcgacaaagttcgtctat 4228289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 120 - 245
Target Start/End: Complemental strand, 4172804 - 4172680
Alignment:
Q  120 atgataagcatcatgttcaacaactatcaatcattcattcgtcctcataaagtcatattaatctattcacaaagagacttacaagttattcggtcttaaa 219  Q
    ||||||| |||||| ||||||| ||||||||||||||| | || ||||| | |||| | || ||||||||||| ||| || |||| |||||  |||||||    
T  4172804 atgataaacatcatattcaacacctatcaatcattcatacatcttcatataatcatgtcaaactattcacaaa-agatttgcaagatattcaatcttaaa 4172706  T
Q  220 aatcatttccaacaaagttcgtctat 245  Q
     ||||||| | |||||||||||||||    
T  4172705 gatcattttcgacaaagttcgtctat 4172680  T

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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 245 - 342
Target Start/End: Original strand, 21299148 - 21299244
Alignment:
Q  245 tttggtaaaaatccccatttttcggttaactctacagtaacaaggaagaccaaatcatttgcctcaactatgcatatacagtaatcaaatttatgtgc 342  Q
    |||||| ||||| | |||||| |||||||||||| || ||||||||| ||||| ||||||||||| |||||||||||||| |||||| |||| |||||    
T  21299148 tttggtgaaaattctcattttccggttaactctagagaaacaaggaa-accaactcatttgcctccactatgcatatacaataatcacatttgtgtgc 21299244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 245 - 342
Target Start/End: Original strand, 21304854 - 21304950
Alignment:
Q  245 tttggtaaaaatccccatttttcggttaactctacagtaacaaggaagaccaaatcatttgcctcaactatgcatatacagtaatcaaatttatgtgc 342  Q
    |||||| ||||| | |||||| |||||||||||| || ||||||||| ||||| ||||||||||| |||||||||||||| |||||| |||| |||||    
T  21304854 tttggtgaaaattctcattttccggttaactctagagaaacaaggaa-accaactcatttgcctccactatgcatatacaataatcacatttgtgtgc 21304950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 245 - 342
Target Start/End: Original strand, 21312691 - 21312787
Alignment:
Q  245 tttggtaaaaatccccatttttcggttaactctacagtaacaaggaagaccaaatcatttgcctcaactatgcatatacagtaatcaaatttatgtgc 342  Q
    |||||| ||||| | |||||| |||||||||||| || ||||||||| ||||| ||||||||||| |||||||||||||| |||||| |||| |||||    
T  21312691 tttggtgaaaattctcattttccggttaactctagagaaacaaggaa-accaactcatttgcctccactatgcatatacaataatcacatttgtgtgc 21312787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 121 - 241
Target Start/End: Complemental strand, 39233 - 39114
Alignment:
Q  121 tgataagcatcatgttcaacaactatcaatcattcattcgtcctcataaagtcatattaatctattcacaaagagacttacaagttattcggtcttaaaa 220  Q
    |||||| |||||||||||||| |||| |||||||||| | || ||||| | |||||| || ||||||| ||| ||| || |||| ||||||||||||||     
T  39233 tgataaacatcatgttcaacacctattaatcattcatacatcttcatacaatcatatcaaactattcataaa-agattttcaaggtattcggtcttaaag 39135  T
Q  221 atcatttccaacaaagttcgt 241  Q
    ||||||| | |||||||||||    
T  39134 atcattttcgacaaagttcgt 39114  T

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Target: scaffold0028; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 252 - 342
Target Start/End: Complemental strand, 38925 - 38836
Alignment:
Q  252 aaaatccccatttttcggttaactctacagtaacaaggaagaccaaatcatttgcctcaactatgcatatacagtaatcaaatttatgtgc 342  Q
    ||||||| |||||| ||| |||||||| || ||||||||| ||||| ||||||||||| |||||||||||||| |||||| |||| |||||    
T  38925 aaaatccacattttccgggtaactctagagaaacaaggaa-accaactcatttgcctccactatgcatatacaataatcacatttgtgtgc 38836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 237 - 342
Target Start/End: Original strand, 16244950 - 16245055
Alignment:
Q  237 ttcgtctattt-ggtaaaaatccccatttttcggttaactctacagtaacaaggaagaccaaatcatttgcctcaactatgcatatacagtaatcaaatt 335  Q
    ||||||||||| ||| ||||| | |||||| ||||||  |||| || ||||||||| ||||| |||||| ||||||||||||||||||| |||||| |||    
T  16244950 ttcgtctatttcggtgaaaattcacattttccggttagttctaaagaaacaaggaa-accaactcatttacctcaactatgcatatacaataatcacatt 16245048  T
Q  336 tatgtgc 342  Q
    | |||||    
T  16245049 tgtgtgc 16245055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 354
Target Start/End: Original strand, 19430137 - 19430192
Alignment:
Q  299 tcatttgcctcaactatgcatatacagtaatcaaatttatgtgcggtcgcatatac 354  Q
    |||||||||||||| | ||||||||| |||||| |||||||||| || ||||||||    
T  19430137 tcatttgcctcaacaaagcatatacaataatcacatttatgtgcagttgcatatac 19430192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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