View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0351-Insertion-4 (Length: 407)

Name: NF0351-Insertion-4
Description: NF0351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0351-Insertion-4
NF0351-Insertion-4
[»] chr2 (18 HSPs)
chr2 (8-238)||(22564924-22565153)
chr2 (298-405)||(22379312-22379419)
chr2 (298-407)||(22564747-22564855)
chr2 (298-405)||(27608070-27608178)
chr2 (298-400)||(3192084-3192186)
chr2 (298-405)||(24185483-24185590)
chr2 (304-405)||(10194003-10194104)
chr2 (9-82)||(22574472-22574545)
chr2 (298-397)||(33527690-33527789)
chr2 (298-405)||(34427013-34427120)
chr2 (298-371)||(3191848-3191921)
chr2 (317-405)||(17595988-17596076)
chr2 (298-388)||(38903783-38903873)
chr2 (325-376)||(41214211-41214262)
chr2 (298-399)||(19381351-19381453)
chr2 (316-399)||(13346721-13346804)
chr2 (301-354)||(17555948-17556001)
chr2 (256-288)||(3191938-3191970)
[»] chr8 (8 HSPs)
chr8 (298-406)||(19195920-19196029)
chr8 (305-397)||(14723381-14723473)
chr8 (298-379)||(18921131-18921212)
chr8 (304-401)||(12658174-12658271)
chr8 (306-387)||(14774843-14774924)
chr8 (308-397)||(28184370-28184459)
chr8 (298-379)||(31451595-31451676)
chr8 (313-387)||(11306432-11306506)
[»] scaffold0301 (1 HSPs)
scaffold0301 (298-405)||(4874-4981)
[»] chr4 (9 HSPs)
chr4 (298-406)||(11673468-11673576)
chr4 (298-397)||(55468934-55469032)
chr4 (342-407)||(9047443-9047508)
chr4 (298-405)||(43096102-43096209)
chr4 (306-387)||(8500211-8500292)
chr4 (305-387)||(9217766-9217847)
chr4 (306-387)||(48710746-48710827)
chr4 (304-384)||(27449219-27449299)
chr4 (322-405)||(29961862-29961945)
[»] chr3 (10 HSPs)
chr3 (298-404)||(9701512-9701618)
chr3 (304-397)||(7578623-7578716)
chr3 (298-397)||(31136838-31136937)
chr3 (298-402)||(14960381-14960485)
chr3 (306-406)||(27537919-27538019)
chr3 (298-405)||(22721115-22721222)
chr3 (309-397)||(1344109-1344191)
chr3 (308-373)||(41517764-41517829)
chr3 (306-375)||(13598773-13598842)
chr3 (298-334)||(29859829-29859865)
[»] chr7 (9 HSPs)
chr7 (298-405)||(10012861-10012968)
chr7 (304-403)||(37247092-37247191)
chr7 (298-397)||(19921174-19921273)
chr7 (298-404)||(45088707-45088812)
chr7 (298-405)||(36585672-36585781)
chr7 (306-387)||(580553-580634)
chr7 (298-390)||(28603681-28603773)
chr7 (349-387)||(20534828-20534866)
chr7 (326-387)||(13043293-13043354)
[»] chr1 (9 HSPs)
chr1 (298-405)||(34428453-34428560)
chr1 (314-399)||(48920966-48921051)
chr1 (298-390)||(22634787-22634879)
chr1 (298-405)||(19280569-19280676)
chr1 (298-405)||(45992405-45992512)
chr1 (298-396)||(40679159-40679257)
chr1 (137-214)||(19795239-19795315)
chr1 (322-403)||(12213174-12213255)
chr1 (324-405)||(46262205-46262286)
[»] scaffold0292 (1 HSPs)
scaffold0292 (298-390)||(21565-21657)
[»] scaffold0128 (1 HSPs)
scaffold0128 (298-390)||(23375-23467)
[»] scaffold0126 (1 HSPs)
scaffold0126 (298-405)||(43975-44082)
[»] scaffold0664 (1 HSPs)
scaffold0664 (322-405)||(2161-2244)
[»] chr6 (5 HSPs)
chr6 (298-397)||(7705815-7705914)
chr6 (298-336)||(34493438-34493476)
chr6 (308-365)||(26268339-26268395)
chr6 (331-387)||(17238679-17238735)
chr6 (256-288)||(34493388-34493420)
[»] scaffold1544 (1 HSPs)
scaffold1544 (306-406)||(1233-1333)
[»] scaffold0051 (1 HSPs)
scaffold0051 (298-390)||(62832-62924)
[»] scaffold0490 (1 HSPs)
scaffold0490 (298-387)||(10215-10304)
[»] chr5 (6 HSPs)
chr5 (298-403)||(4151814-4151919)
chr5 (306-387)||(23616832-23616913)
chr5 (306-387)||(23848231-23848312)
chr5 (298-387)||(38622938-38623026)
chr5 (298-334)||(23138453-23138489)
chr5 (298-334)||(26229297-26229333)


Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 238
Target Start/End: Complemental strand, 22565153 - 22564924
Alignment:
Q  8 cgaagcaggacatatacggaaaaagtgaggaagcaagcaacacaagattgaatttcatcattgaaccacgatgacgaaaaacagttatggtatcaattga 107  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||    
T  22565153 cgaagcaggacatatactgaaaaagtgaggaagcaagcaacacaagattgaatttcatcattgaaccacgatgacaaaaggcagttatggtatcaattga 22565054  T
Q  108 ttatgtatttattagtggtcagacttttctattattttttaaattgtaatatgatagtgtcaaaattgtggaatttgattggttgagtgtgtattgttgc 207  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||  ||||    
T  22565053 ttatgtatttattagtggtcagacttttctattatttttaaaattgtaaaatgat-gtgtcaaaattgtggaatttgattggttgagtgtgtataattgc 22564955  T
Q  208 tatacacaatatgtttaccatctttaaactc 238  Q
    |||||||||| ||||||||||||||||||||    
T  22564954 tatacacaatctgtttaccatctttaaactc 22564924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 298 - 405
Target Start/End: Original strand, 22379312 - 22379419
Alignment:
Q  298 tacaagaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatg 397  Q
    |||||||||||||||||||||||| |||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22379312 tacaagaaagaaaagggggactatgccaaaaccttttcagaaggtgttgaatctaaagttgggcattcccaacctattcctagtgtactctcccctaatg 22379411  T
Q  398 aaatcagg 405  Q
    ||||||||    
T  22379412 aaatcagg 22379419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 298 - 407
Target Start/End: Complemental strand, 22564855 - 22564747
Alignment:
Q  298 tacaagaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatg 397  Q
    ||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||    
T  22564855 tacaagaaagaaaagggagaatataccaaaaccttttcaaaag-tgttaaatctaaagttttgcattcccaacctattcctagtgtactctccactaatg 22564757  T
Q  398 aaatcaggag 407  Q
    ||||||||||    
T  22564756 aaatcaggag 22564747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 298 - 405
Target Start/End: Complemental strand, 27608178 - 27608070
Alignment:
Q  298 tacaagaaagaaaagggggactataccaaaacctttt-caaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaat 396  Q
    |||||||||||||||||||||||| ||||||| |||| || ||| |||| |||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  27608178 tacaagaaagaaaagggggactatgccaaaacgtttttcagaaggtgttgaatctaaagttgggcattcccagcctattcctagtgtactctcccctaat 27608079  T
Q  397 gaaatcagg 405  Q
    |||||||||    
T  27608078 gaaatcagg 27608070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 298 - 400
Target Start/End: Complemental strand, 3192186 - 3192084
Alignment:
Q  298 tacaagaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatg 397  Q
    ||||||||||||||||| ||||||||| ||| ||||||||||  ||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||    
T  3192186 tacaagaaagaaaagggagactatacctaaatcttttcaaaatgtgttaaatctaaagttgggtattcccaacatattcgtagtgtactctcctctaatg 3192087  T
Q  398 aaa 400  Q
    |||    
T  3192086 aaa 3192084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 298 - 405
Target Start/End: Original strand, 24185483 - 24185590
Alignment:
Q  298 tacaagaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatg 397  Q
    |||||||||||||||||||||   ||||||||||||||||||| ||||||| || || |||||||| ||||||||||||||| |||||||||| |||||     
T  24185483 tacaagaaagaaaagggggaccgaaccaaaaccttttcaaaagttgttaaacctgaaattgggcatacccaacctattcctaatgtactctcccctaata 24185582  T
Q  398 aaatcagg 405  Q
    ||||||||    
T  24185583 aaatcagg 24185590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 304 - 405
Target Start/End: Original strand, 10194003 - 10194104
Alignment:
Q  304 aaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatgaaatca 403  Q
    ||||||| || |||||||||||||||||||||||||| |||||||||| || |||  |||| | |||||||||||| |||||||||| ||||||||||||    
T  10194003 aaagaaacggaggactataccaaaaccttttcaaaaggtgttaaatctgaaattgaacatttctaacctattcctattgtactctcccctaatgaaatca 10194102  T
Q  404 gg 405  Q
    ||    
T  10194103 gg 10194104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 22574545 - 22574472
Alignment:
Q  9 gaagcaggacatatacggaaaaagtgaggaagcaagcaacacaagattgaatttcatcattgaaccacgatgac 82  Q
    ||||||||||||||||   ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  22574545 gaagcaggacatatactagaaaagagaggaagcaagcaacacaagattgaatttcatcattgaaccacgatgac 22574472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 298 - 397
Target Start/End: Complemental strand, 33527789 - 33527690
Alignment:
Q  298 tacaagaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatg 397  Q
    ||||| ||||||||||| ||||||||||||||||||||||||| |  |||||||||||||||||||  | ||||| |||||| |||||||| ||||||||    
T  33527789 tacaaaaaagaaaagggagactataccaaaaccttttcaaaaggtagtaaatctaaagttgggcatatctaacctgttcctattgtactcttctctaatg 33527690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 298 - 405
Target Start/End: Original strand, 34427013 - 34427120
Alignment:
Q  298 tacaagaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatg 397  Q
    ||||| |||||||||  |||||| |||||||| |||| ||||| |||||||| | || ||||| |||||||||||||||||| ||||||||||  |||||    
T  34427013 tacaaaaaagaaaagaaggactaaaccaaaacttttttaaaaggtgttaaatttgaaattgggtattcccaacctattcctattgtactctcccttaatg 34427112  T
Q  398 aaatcagg 405  Q
    ||||||||    
T  34427113 aaatcagg 34427120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 298 - 371
Target Start/End: Complemental strand, 3191921 - 3191848
Alignment:
Q  298 tacaagaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacc 371  Q
    ||||||||||| |||||  ||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||    
T  3191921 tacaagaaagagaagggaaactataccaaaaccttttcaaaagatgttaaatttaaagttaggcatttccaacc 3191848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 317 - 405
Target Start/End: Original strand, 17595988 - 17596076
Alignment:
Q  317 actataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatgaaatcagg 405  Q
    |||||||||||||||||| ||||| |||||||||| || || |||||||||||| |||| | |||||| |||  |||||||||||||||    
T  17595988 actataccaaaacctttttaaaaggtgttaaatctgaaattaggcattcccaacttatttccagtgtaatctattctaatgaaatcagg 17596076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 298 - 388
Target Start/End: Complemental strand, 38903873 - 38903783
Alignment:
Q  298 tacaagaaagaaaagggggactataccaaa-accttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactct 388  Q
    |||||||||||||||||| |||| |||||| ||||||||| |||||  ||||||| || |||||||| |||||||||||| |||||||||||    
T  38903873 tacaagaaagaaaagggg-actagaccaaataccttttcataagataataaatctgaaattgggcatgcccaacctattcatagtgtactct 38903783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 376
Target Start/End: Original strand, 41214211 - 41214262
Alignment:
Q  325 aaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattc 376  Q
    |||||||||||||||| || |  |||||||||||||||||||||||||||||    
T  41214211 aaaaccttttcaaaaggtgatgtatctaaagttgggcattcccaacctattc 41214262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 298 - 399
Target Start/End: Original strand, 19381351 - 19381453
Alignment:
Q  298 tacaagaaagaaaagggggacta-taccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaat 396  Q
    |||||||||||| |||||||| | | |||||||||||| | ||| |  |||||||| |||||  ||| |||||| |||||||||||||||| || |||||    
T  19381351 tacaagaaagaatagggggacaaatgccaaaaccttttgagaaggttgtaaatctatagttgaacatgcccaacttattcctagtgtactcccccctaat 19381450  T
Q  397 gaa 399  Q
    |||    
T  19381451 gaa 19381453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 316 - 399
Target Start/End: Complemental strand, 13346804 - 13346721
Alignment:
Q  316 gactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatgaa 399  Q
    ||||||||||||||||||| ||||| ||   |||||||| || || |||||||| ||||| ||| ||||||| || ||||||||    
T  13346804 gactataccaaaaccttttgaaaagttgaagaatctaaaattaggtattcccaaactatttctaatgtactcacccctaatgaa 13346721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 354
Target Start/End: Original strand, 17555948 - 17556001
Alignment:
Q  301 aagaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaa 354  Q
    |||||| || ||||||||||||||||||||| |||||||| ||  |||||||||    
T  17555948 aagaaaaaagagggggactataccaaaacctcttcaaaagttgacaaatctaaa 17556001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 288
Target Start/End: Complemental strand, 3191970 - 3191938
Alignment:
Q  256 ataaacagatgcagatgcaccatttcattagat 288  Q
    ||||||||||||||||||| |||||||||||||    
T  3191970 ataaacagatgcagatgcatcatttcattagat 3191938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 298 - 406
Target Start/End: Original strand, 19195920 - 19196029
Alignment:
Q  298 tacaagaaagaaaagggggactata-ccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaat 396  Q
    ||||||||||||||||||||||| | |||||||||||||||||| || | ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  19195920 tacaagaaagaaaagggggactaaagccaaaaccttttcaaaaggtggtgaatctaaagttgggcatacccaacctattcctagtgtactctcctctaat 19196019  T
Q  397 gaaatcagga 406  Q
    ||||||||||    
T  19196020 gaaatcagga 19196029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 305 - 397
Target Start/End: Complemental strand, 14723473 - 14723381
Alignment:
Q  305 aagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatg 397  Q
    ||||||||||||||||||||||||||||||| ||||||  ||||| ||||||||||||| |||||||| ||| || |||||||||||||||||    
T  14723473 aagaaaagggggactataccaaaaccttttcgaaagatagtaaatttaaagttgggcatacccaacctgttcttattgtactctcctctaatg 14723381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 298 - 379
Target Start/End: Original strand, 18921131 - 18921212
Alignment:
Q  298 tacaagaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattccta 379  Q
    ||||||| |||||||||||||||  | |||||||||||||||| ||||||||||||| |||| |||||||||||||||||||    
T  18921131 tacaagatagaaaagggggactacgctaaaaccttttcaaaaggtgttaaatctaaaattggacattcccaacctattccta 18921212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 304 - 401
Target Start/End: Original strand, 12658174 - 12658271
Alignment:
Q  304 aaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatgaaat 401  Q
    |||||||||||||| |||||||||||||||| ||||| |||||||| | || |||| |||| |||||| ||||||| | |||||||| ||||||||||    
T  12658174 aaagaaaagggggattataccaaaacctttttaaaaggtgttaaatttgaatttggacattgccaacccattcctaatatactctcccctaatgaaat 12658271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 306 - 387
Target Start/End: Original strand, 14774843 - 14774924
Alignment:
Q  306 agaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactc 387  Q
    ||||||||||||||| ||||||||||||||||||| ||  | | |||||||||||||| ||||||||||||||| |||||||    
T  14774843 agaaaagggggactaaaccaaaaccttttcaaaaggtgacatacctaaagttgggcatacccaacctattcctattgtactc 14774924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 308 - 397
Target Start/End: Original strand, 28184370 - 28184459
Alignment:
Q  308 aaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatg 397  Q
    ||||||||||| |||||||||  |||||||||| |   |||| ||||||||||||| ||||||||||||||| |||||||||||||||||    
T  28184370 aaaagggggaccataccaaaaatttttcaaaaggtagaaaatttaaagttgggcatacccaacctattcctattgtactctcctctaatg 28184459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 298 - 379
Target Start/End: Original strand, 31451595 - 31451676
Alignment:
Q  298 tacaagaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattccta 379  Q
    ||||||| |||||| ||||||||  | |||||||||||||||| ||||||||||||| |||| |||||||||||||||||||    
T  31451595 tacaagatagaaaatggggactaggctaaaaccttttcaaaaggtgttaaatctaaaattggccattcccaacctattccta 31451676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 387
Target Start/End: Complemental strand, 11306506 - 11306432
Alignment:
Q  313 ggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactc 387  Q
    |||||| | ||||||||||||||||||| ||  | | |||||||||||||| || |||||||||||| |||||||    
T  11306506 ggggaccaaaccaaaaccttttcaaaaggtgacatacctaaagttgggcatacctaacctattcctattgtactc 11306432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 298 - 405
Target Start/End: Original strand, 4874 - 4981
Alignment:
Q  298 tacaagaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatg 397  Q
    |||||||||||||||||||||||| |||||||||||||| ||  |||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||    
T  4874 tacaagaaagaaaagggggactatgccaaaaccttttcagaaagtgttaaatctaaagttaggcattcccagcctattcctagtgtactctcccctaatg 4973  T
Q  398 aaatcagg 405  Q
    ||||||||    
T  4974 aaatcagg 4981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 8e-31; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 298 - 406
Target Start/End: Original strand, 11673468 - 11673576
Alignment:
Q  298 tacaagaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatg 397  Q
    |||||||||||||||||||||   ||||||||||||||||||| ||   ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  11673468 tacaagaaagaaaagggggaccgaaccaaaaccttttcaaaaggtgcagaatctaaagttgggcattcccaacctatttctagtgtactctcctctaatg 11673567  T
Q  398 aaatcagga 406  Q
     | ||||||    
T  11673568 gattcagga 11673576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 298 - 397
Target Start/End: Complemental strand, 55469032 - 55468934
Alignment:
Q  298 tacaagaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatg 397  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| |  ||||||||||||||||||| ||||| ||||||||| |||||||||||||||||    
T  55469032 tacaaaaaagaaaaggggg-ctataccaaaaccttttcaaaaggtagtaaatctaaagttgggcatacccaatctattcctattgtactctcctctaatg 55468934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 342 - 407
Target Start/End: Original strand, 9047443 - 9047508
Alignment:
Q  342 tgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatgaaatcaggag 407  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  9047443 tgttaaatctaaagttgggcattctcaacctattcctagtgtactctcctctaatgaaatcaggag 9047508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 298 - 405
Target Start/End: Original strand, 43096102 - 43096209
Alignment:
Q  298 tacaagaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatg 397  Q
    ||||||||||||||||||||  | |||||||||||||||| || ||||||| || || |||||||| ||||||||||| ||  |||||||||| ||||||    
T  43096102 tacaagaaagaaaagggggatcaaaccaaaaccttttcaataggtgttaaacctgaaattgggcatacccaacctatttctgatgtactctcccctaatg 43096201  T
Q  398 aaatcagg 405  Q
    ||||||||    
T  43096202 aaatcagg 43096209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 306 - 387
Target Start/End: Complemental strand, 8500292 - 8500211
Alignment:
Q  306 agaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactc 387  Q
    |||||||||||| || ||||| ||||||||||||| || |||||||||||||||||||| |||||||||||||| |||||||    
T  8500292 agaaaagggggattagaccaagaccttttcaaaaggtggtaaatctaaagttgggcatttccaacctattcctaatgtactc 8500211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 305 - 387
Target Start/End: Complemental strand, 9217847 - 9217766
Alignment:
Q  305 aagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactc 387  Q
    |||||||||||||| | |||||| |||||||||||| |   | ||||||| |||||||||||||||||||||||| |||||||    
T  9217847 aagaaaagggggaccaaaccaaa-ccttttcaaaaggttacatatctaaaattgggcattcccaacctattcctattgtactc 9217766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 387
Target Start/End: Complemental strand, 48710827 - 48710746
Alignment:
Q  306 agaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactc 387  Q
    ||||||||||||| | || |||||||||||||||| |   | | |||||||||||| | ||||||||||||||| |||||||    
T  48710827 agaaaagggggaccaaactaaaaccttttcaaaaggtaacatacctaaagttgggcctacccaacctattcctattgtactc 48710746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 384
Target Start/End: Complemental strand, 27449299 - 27449219
Alignment:
Q  304 aaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgta 384  Q
    |||||||||| |||| | |||| |||||||||||||| ||  | || ||||||||||||| |||||| |||||||| ||||    
T  27449299 aaagaaaaggaggacaacaccagaaccttttcaaaaggtggcatatttaaagttgggcatacccaacatattcctattgta 27449219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 405
Target Start/End: Original strand, 29961862 - 29961945
Alignment:
Q  322 accaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatgaaatcagg 405  Q
    ||||||||||||||||||| || | || ||  | ||||||||  |||||||| ||||| |||||||||| ||||| ||||||||    
T  29961862 accaaaaccttttcaaaaggtgctgaacctgcaattgggcatatccaacctactcctaatgtactctcccctaattaaatcagg 29961945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 298 - 404
Target Start/End: Complemental strand, 9701618 - 9701512
Alignment:
Q  298 tacaagaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatg 397  Q
    ||||| ||||||||||||||||||||||||| ||||||||||| |  |||||||||| || ||||| ||||||||||||||| |||||||||||||||||    
T  9701618 tacaaaaaagaaaagggggactataccaaaatcttttcaaaaggtagtaaatctaaattttggcatacccaacctattcctattgtactctcctctaatg 9701519  T
Q  398 aaatcag 404  Q
    || ||||    
T  9701518 aagtcag 9701512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 304 - 397
Target Start/End: Complemental strand, 7578716 - 7578623
Alignment:
Q  304 aaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatg 397  Q
    |||||||| |||||||||||||||||||||||||||| |  ||||||||||||||||||| ||||||||||||||| || ||||||||||||||    
T  7578716 aaagaaaaaggggactataccaaaaccttttcaaaaggtagtaaatctaaagttgggcatacccaacctattcctattgcactctcctctaatg 7578623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 298 - 397
Target Start/End: Complemental strand, 31136937 - 31136838
Alignment:
Q  298 tacaagaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatg 397  Q
    ||||| ||||||||||| ||||||||||||||||||||||||| |  ||||||||||||||||||| || ||||| |||||| |||||||||||||||||    
T  31136937 tacaaaaaagaaaagggagactataccaaaaccttttcaaaaggtagtaaatctaaagttgggcatacctaacctgttcctattgtactctcctctaatg 31136838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 298 - 402
Target Start/End: Complemental strand, 14960485 - 14960381
Alignment:
Q  298 tacaagaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatg 397  Q
    |||||||||||||||||||||   |||||||||||||||||||| |||||| || || |||||||| ||||||||||||||| |||||||||| |||||     
T  14960485 tacaagaaagaaaagggggaccgaaccaaaaccttttcaaaagacgttaaacctgaaattgggcatacccaacctattcctaatgtactctcccctaata 14960386  T
Q  398 aaatc 402  Q
    |||||    
T  14960385 aaatc 14960381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 306 - 406
Target Start/End: Complemental strand, 27538019 - 27537919
Alignment:
Q  306 agaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatgaaatcagg 405  Q
    ||||||||||||||||||||||||||||||||||| |   |||| | || |||||||  |||||||||||| |||||||||||||||||||||| |||||    
T  27538019 agaaaagggggactataccaaaaccttttcaaaaggtacaaaatttgaaattgggcaagcccaacctattcttagtgtactctcctctaatgaattcagg 27537920  T
Q  406 a 406  Q
    |    
T  27537919 a 27537919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 298 - 405
Target Start/End: Original strand, 22721115 - 22721222
Alignment:
Q  298 tacaagaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatg 397  Q
    |||| |||||||||||||||| | |||||||||||||||| || ||||||| || || |||||||| ||||||||||||||  |||||||||| || |||    
T  22721115 tacaggaaagaaaagggggaccaaaccaaaaccttttcaataggtgttaaacctgaaattgggcatacccaacctattcctgatgtactctccccttatg 22721214  T
Q  398 aaatcagg 405  Q
    ||||||||    
T  22721215 aaatcagg 22721222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 309 - 397
Target Start/End: Original strand, 1344109 - 1344191
Alignment:
Q  309 aaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatg 397  Q
    ||||||||||||||||||||||||||||||||||        ||||||| ||||| | |||||| |||||| |||||||||||||||||    
T  1344109 aaagggggactataccaaaaccttttcaaaagat------agtaaagtttggcatactcaacctgttcctattgtactctcctctaatg 1344191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 308 - 373
Target Start/End: Original strand, 41517764 - 41517829
Alignment:
Q  308 aaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaaccta 373  Q
    |||||| |||||||||||||||||||||||||| ||  |||||| || || |||||||||||||||    
T  41517764 aaaaggaggactataccaaaaccttttcaaaagttgcaaaatctgaaattaggcattcccaaccta 41517829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 375
Target Start/End: Original strand, 13598773 - 13598842
Alignment:
Q  306 agaaaagggggactataccaaaacctt-ttcaaaagatgttaaatctaaagttgggcattcccaacctatt 375  Q
    |||||||| ||| |||||||||||||| || |||||| | |||| ||||||||||||||||| ||||||||    
T  13598773 agaaaaggaggattataccaaaaccttcttaaaaaga-gataaacctaaagttgggcattcctaacctatt 13598842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 334
Target Start/End: Complemental strand, 29859865 - 29859829
Alignment:
Q  298 tacaagaaagaaaagggggactataccaaaacctttt 334  Q
    |||||||||||||||||||||||  ||||||||||||    
T  29859865 tacaagaaagaaaagggggactaggccaaaacctttt 29859829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 7e-28; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 298 - 405
Target Start/End: Complemental strand, 10012968 - 10012861
Alignment:
Q  298 tacaagaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatg 397  Q
    |||||||||||||||||||||   ||||||||||||||||||| ||||||| || || |||||||| ||||||||||||||| |||||||||| |||||     
T  10012968 tacaagaaagaaaagggggaccgaaccaaaaccttttcaaaaggtgttaaacctgaaattgggcatacccaacctattcctaatgtactctcccctaata 10012869  T
Q  398 aaatcagg 405  Q
    ||||||||    
T  10012868 aaatcagg 10012861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 304 - 403
Target Start/End: Complemental strand, 37247191 - 37247092
Alignment:
Q  304 aaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatgaaatca 403  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||| | || |||| |||| |||||| |||||||||||| ||||| ||||||||||||    
T  37247191 aaagaaaagggagactataccaaaaccttttcaaaagatgttgaatatgaaattggacatttccaaccaattcctagtgtattctcccctaatgaaatca 37247092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 298 - 397
Target Start/End: Complemental strand, 19921273 - 19921174
Alignment:
Q  298 tacaagaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatg 397  Q
    ||||| ||||||||||||||| | | ||||||||||||||||| |   |||||||||||||| ||| |||||||| |||||| |||||||||||||||||    
T  19921273 tacaaaaaagaaaagggggaccaaatcaaaaccttttcaaaaggtagaaaatctaaagttggacatacccaacctgttcctattgtactctcctctaatg 19921174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 298 - 404
Target Start/End: Complemental strand, 45088812 - 45088707
Alignment:
Q  298 tacaagaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatg 397  Q
    ||||||| || |||||||| ||||||||||||||||||||||||||||||||| ||| |  ||||| ||||||||||| | | ||||||||||  |||||    
T  45088812 tacaagatagcaaaggggg-ctataccaaaaccttttcaaaagatgttaaatcgaaaatcaggcatacccaacctatttcaaatgtactctcccgtaatg 45088714  T
Q  398 aaatcag 404  Q
    |||||||    
T  45088713 aaatcag 45088707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 298 - 405
Target Start/End: Complemental strand, 36585781 - 36585672
Alignment:
Q  298 tacaagaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtact--ctcctctaa 395  Q
    ||||| |||||||||||||||| |||||||||||||||||||| ||| ||| || || || ||||||| || ||||||||||| | |||  |||| ||||    
T  36585781 tacaataaagaaaagggggactgtaccaaaaccttttcaaaaggtgtaaaacctgaaattaggcattctcatcctattcctagagcactccctcccctaa 36585682  T
Q  396 tgaaatcagg 405  Q
    ||||||||||    
T  36585681 tgaaatcagg 36585672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 306 - 387
Target Start/End: Complemental strand, 580634 - 580553
Alignment:
Q  306 agaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactc 387  Q
    ||||||||||||| | ||||||||||||||||||| ||  | | |||||||||||||| ||||||||||||||| |||||||    
T  580634 agaaaagggggaccaaaccaaaaccttttcaaaaggtgacatacctaaagttgggcatacccaacctattcctattgtactc 580553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 298 - 390
Target Start/End: Complemental strand, 28603773 - 28603681
Alignment:
Q  298 tacaagaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcc 390  Q
    ||||||||||||| || ||| || ||| ||||||| ||||||   | ||||| |||| |||| ||||||||||||||||||| ||||||||||    
T  28603773 tacaagaaagaaagggaggattaaacctaaaccttctcaaaatgagataaatttaaaattggacattcccaacctattcctaatgtactctcc 28603681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 387
Target Start/End: Complemental strand, 20534866 - 20534828
Alignment:
Q  349 tctaaagttgggcattcccaacctattcctagtgtactc 387  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  20534866 tctaaagttgggcattcccaacctgttcctaatgtactc 20534828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 387
Target Start/End: Complemental strand, 13043354 - 13043293
Alignment:
Q  326 aaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactc 387  Q
    ||||||||||||||| |   | ||||||||||||| | |||||||||||||||| |||||||    
T  13043354 aaaccttttcaaaaggttacatatctaaagttgggtaatcccaacctattcctattgtactc 13043293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 7e-28; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 298 - 405
Target Start/End: Complemental strand, 34428560 - 34428453
Alignment:
Q  298 tacaagaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatg 397  Q
    ||||| ||||||||||||||| ||||||||||||||||||||| |   |||||||||||||| ||| |||||||| |||||| |||||||||||||||||    
T  34428560 tacaaaaaagaaaagggggaccataccaaaaccttttcaaaaggtagaaaatctaaagttggacatacccaacctgttcctattgtactctcctctaatg 34428461  T
Q  398 aaatcagg 405  Q
     |||||||    
T  34428460 gaatcagg 34428453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 314 - 399
Target Start/End: Complemental strand, 48921051 - 48920966
Alignment:
Q  314 gggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatgaa 399  Q
    ||||||||||||||||||||||||||| |  ||||||||||||||||||| |||||||| |||||| |||||||||||||||||||    
T  48921051 gggactataccaaaaccttttcaaaaggtagtaaatctaaagttgggcatacccaacctgttcctattgtactctcctctaatgaa 48920966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 298 - 390
Target Start/End: Complemental strand, 22634879 - 22634787
Alignment:
Q  298 tacaagaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcc 390  Q
    |||||||  ||||||||||| || ||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||| ||||||||||    
T  22634879 tacaagatggaaaagggggattagaccaaaaccttttcagaaggtggtaaatctaaagttgggcattcccaacctattcctaatgtactctcc 22634787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 298 - 405
Target Start/End: Original strand, 19280569 - 19280676
Alignment:
Q  298 tacaagaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatg 397  Q
    ||||||||||||||||||||| | ||||||||||||| ||||| ||||||| || || |||||||| |||||| |||||||| |||||||||| |||||     
T  19280569 tacaagaaagaaaagggggaccaaaccaaaacctttttaaaaggtgttaaacctgaaattgggcatacccaacatattcctaatgtactctcccctaata 19280668  T
Q  398 aaatcagg 405  Q
    ||||||||    
T  19280669 aaatcagg 19280676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 298 - 405
Target Start/End: Complemental strand, 45992512 - 45992405
Alignment:
Q  298 tacaagaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatg 397  Q
    ||||||||||||||| ||||| | |||||||||||||||| || |||||||||| || |||||||| |||||| |||||||  |||||||||| ||||||    
T  45992512 tacaagaaagaaaagagggaccaaaccaaaaccttttcaataggtgttaaatctgaaattgggcatacccaacttattcctgatgtactctcccctaatg 45992413  T
Q  398 aaatcagg 405  Q
    ||||||||    
T  45992412 aaatcagg 45992405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 298 - 396
Target Start/End: Complemental strand, 40679257 - 40679159
Alignment:
Q  298 tacaagaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaat 396  Q
    ||||| ||||||||||||||| | ||||||||||||||||||| |   |||||||||||||||||| |||||||| |||||| | || |||||||||||    
T  40679257 tacaaaaaagaaaagggggaccaaaccaaaaccttttcaaaaggtagaaaatctaaagttgggcatacccaacctgttcctattataatctcctctaat 40679159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 137 - 214
Target Start/End: Original strand, 19795239 - 19795315
Alignment:
Q  137 tattattttttaaattgtaatatgatagtgtcaaaattgtggaatttgattggttgagtgtgtattgttgctatacac 214  Q
    ||||| |||| |||||| |||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  19795239 tattaattttaaaattgaaatatgat-gtgtcaaaattgtggattttgattggttgagtgtgtatagttgctatacac 19795315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 322 - 403
Target Start/End: Complemental strand, 12213255 - 12213174
Alignment:
Q  322 accaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatgaaatca 403  Q
    ||||||||||||||||||||||||||| || |  |||||||| |||||| |||||||| |||||||||| ||||| ||||||    
T  12213255 accaaaaccttttcaaaagatgttaaacctgatattgggcatacccaacatattcctaatgtactctcccctaataaaatca 12213174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 324 - 405
Target Start/End: Original strand, 46262205 - 46262286
Alignment:
Q  324 caaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatgaaatcagg 405  Q
    ||||||||||||||||| |||| ||||| ||||||||||| |||||  |||||||| ||| |||||||||||| ||||||||    
T  46262205 caaaaccttttcaaaaggtgttgaatctgaagttgggcatacccaatatattcctaatgtcctctcctctaattaaatcagg 46262286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0292 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0292
Description:

Target: scaffold0292; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 298 - 390
Target Start/End: Original strand, 21565 - 21657
Alignment:
Q  298 tacaagaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcc 390  Q
    |||||||  ||||||||||| || ||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||| ||||||||||    
T  21565 tacaagatggaaaagggggattagaccaaaaccttttcagaaggtggtaaatctaaagttgggcattcccaacctattcctaatgtactctcc 21657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 298 - 390
Target Start/End: Original strand, 23375 - 23467
Alignment:
Q  298 tacaagaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcc 390  Q
    ||||| |||||||| ||||| || ||||||||||||||||||| || |||||||||||||||| |||||||||||||||||| ||||||||||    
T  23375 tacaaaaaagaaaaaggggattagaccaaaaccttttcaaaaggtggtaaatctaaagttgggtattcccaacctattcctaatgtactctcc 23467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 298 - 405
Target Start/End: Complemental strand, 44082 - 43975
Alignment:
Q  298 tacaagaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatg 397  Q
    ||||||||||||||||||| |   ||||||||||||||||||| ||||||| || || |||||||| ||||||||||||||| |||||||||| |||||     
T  44082 tacaagaaagaaaaggggggccgaaccaaaaccttttcaaaaggtgttaaacctgaaattgggcatacccaacctattcctaatgtactctcccctaata 43983  T
Q  398 aaatcagg 405  Q
    ||||||||    
T  43982 aaatcagg 43975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0664 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0664
Description:

Target: scaffold0664; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 322 - 405
Target Start/End: Complemental strand, 2244 - 2161
Alignment:
Q  322 accaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatgaaatcagg 405  Q
    ||||||||||||||||||| ||||||| || || |||||||| ||||||||||||||| |||||||||| ||||| ||||||||    
T  2244 accaaaaccttttcaaaaggtgttaaacctgaaattgggcatacccaacctattcctaatgtactctcccctaataaaatcagg 2161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 298 - 397
Target Start/End: Complemental strand, 7705914 - 7705815
Alignment:
Q  298 tacaagaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatg 397  Q
    ||||| |||||||| |||||||||||||||||||||| |||| ||  ||||| |||||||||||||  ||||||| ||| || |||||||||||||||||    
T  7705914 tacaaaaaagaaaatggggactataccaaaacctttttaaaatatagtaaatttaaagttgggcatatccaacctgttcttattgtactctcctctaatg 7705815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 298 - 336
Target Start/End: Original strand, 34493438 - 34493476
Alignment:
Q  298 tacaagaaagaaaagggggactataccaaaaccttttca 336  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  34493438 tacaagaaagaaaaggaggactataccaaaaccttttca 34493476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 365
Target Start/End: Complemental strand, 26268395 - 26268339
Alignment:
Q  308 aaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattc 365  Q
    ||||||||| |||||||||||||||||||||||||    |||||||| ||||||||||    
T  26268395 aaaaggggg-ctataccaaaaccttttcaaaagatagagaatctaaaattgggcattc 26268339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 387
Target Start/End: Original strand, 17238679 - 17238735
Alignment:
Q  331 ttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactc 387  Q
    |||||||||| |  ||||||||||||||||||| ||| || |||||||| |||||||    
T  17238679 ttttcaaaaggtaataaatctaaagttgggcatacccgacttattcctaatgtactc 17238735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 288
Target Start/End: Original strand, 34493388 - 34493420
Alignment:
Q  256 ataaacagatgcagatgcaccatttcattagat 288  Q
    ||||||||||||||||||| |||||||||||||    
T  34493388 ataaacagatgcagatgcatcatttcattagat 34493420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1544 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold1544
Description:

Target: scaffold1544; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 306 - 406
Target Start/End: Complemental strand, 1333 - 1233
Alignment:
Q  306 agaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatgaaatcagg 405  Q
    ||||||||||||| | ||||||||||||||||||| |   ||| || || |||||||  |||||||||||| |||||||||||||||||||||| |||||    
T  1333 agaaaagggggacaaaaccaaaaccttttcaaaaggtacaaaacctgaaattgggcaagcccaacctattcttagtgtactctcctctaatgaattcagg 1234  T
Q  406 a 406  Q
    |    
T  1233 a 1233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 298 - 390
Target Start/End: Complemental strand, 62924 - 62832
Alignment:
Q  298 tacaagaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcc 390  Q
    |||||||||||||||||||| || ||||| ||||||||| ||| |  ||||||||||||||||  ||||||||||||| ||| ||||||||||    
T  62924 tacaagaaagaaaagggggaataaaccaagaccttttcataaggtagtaaatctaaagttgggttttcccaacctatttctaatgtactctcc 62832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 298 - 387
Target Start/End: Complemental strand, 10304 - 10215
Alignment:
Q  298 tacaagaaagaaaagggggactata-ccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactc 387  Q
    |||||||||||||||||||| | || |||||||||||||||||| ||  |||||| ||||||||||| ||||||||||||||| |||||||    
T  10304 tacaagaaagaaaaggggga-tctagccaaaaccttttcaaaaggtgacaaatctgaagttgggcatacccaacctattcctattgtactc 10215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 298 - 403
Target Start/End: Complemental strand, 4151919 - 4151814
Alignment:
Q  298 tacaagaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatg 397  Q
    ||||||||||||||||||||| | |||||||||||||||| || ||||||| || || |||| |||  |||||||||| ||  ||| ||||||  |||||    
T  4151919 tacaagaaagaaaagggggaccaaaccaaaaccttttcaataggtgttaaacctgaaattggacatatccaacctatttctcatgtgctctcccttaatg 4151820  T
Q  398 aaatca 403  Q
    ||||||    
T  4151819 aaatca 4151814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 306 - 387
Target Start/End: Original strand, 23616832 - 23616913
Alignment:
Q  306 agaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactc 387  Q
    ||||||||||||| | ||||||||||||||||||| ||  | | || ||||||||||| ||||||||||||||| |||||||    
T  23616832 agaaaagggggaccaaaccaaaaccttttcaaaaggtgacatacctgaagttgggcatacccaacctattcctattgtactc 23616913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 306 - 387
Target Start/End: Original strand, 23848231 - 23848312
Alignment:
Q  306 agaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactc 387  Q
    ||||||||||||| | ||||||||||||||||||| ||  | | || ||||||||||| ||||||||||||||| |||||||    
T  23848231 agaaaagggggaccaaaccaaaaccttttcaaaaggtgacatacctgaagttgggcatacccaacctattcctattgtactc 23848312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 298 - 387
Target Start/End: Complemental strand, 38623026 - 38622938
Alignment:
Q  298 tacaagaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactc 387  Q
    ||||| ||||||||||||| | | |||||| |||||||||||| |   | |||||||||||| ||||||||| ||||||||| |||||||    
T  38623026 tacaaaaaagaaaaggggggccaaaccaaa-ccttttcaaaaggttacatatctaaagttggacattcccaatctattcctattgtactc 38622938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 334
Target Start/End: Original strand, 23138453 - 23138489
Alignment:
Q  298 tacaagaaagaaaagggggactataccaaaacctttt 334  Q
    |||||||||||||||||||||||  ||||||||||||    
T  23138453 tacaagaaagaaaagggggactaggccaaaacctttt 23138489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 334
Target Start/End: Original strand, 26229297 - 26229333
Alignment:
Q  298 tacaagaaagaaaagggggactataccaaaacctttt 334  Q
    |||||||||||||||||||||||  ||||||||||||    
T  26229297 tacaagaaagaaaagggggactaggccaaaacctttt 26229333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 339 times since January 2019
Visitors: 2756