View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0351_high_1 (Length: 478)
Name: NF0351_high_1
Description: NF0351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0351_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 10 - 449
Target Start/End: Original strand, 26436187 - 26436626
Alignment:
| Q |
10 |
gcagagagtatggcagctgcagcaatgcatgatggcctgtaagtaagaaagctagcatctgcggacagtattcaaacagaaaacccattaaccttgaaaa |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26436187 |
gcagagagtatggcagctgcagcaatgcatgatggcctgtaagtaagaaagctagcatctgcggacagtattcaaacagaaaacccattaaccttgaaaa |
26436286 |
T |
|
| Q |
110 |
ctcacaatagagatcatcacttattttaactacattttcaagcattggaagaattaagggtaaaagaataccttggatattagataagatgatttctgta |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26436287 |
ctcacaatagagatcatcacttattttaactacattttcaagcattggaagaattaagggtaaaagaataccttggatattagataagatgatttctgta |
26436386 |
T |
|
| Q |
210 |
gcacgtgaaattatgaagtggttgaaagttccagttgaatctagcttgcacgcaaagaaactgaggaaactaagtggggtgattgatctcagcctccaat |
309 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26436387 |
gcacgtgaaattatgaagtgggtgaaagttccagttgaatctagcttgcacgcaaagaaactgaggaaactaagtggggtgattgatctcagcctccaat |
26436486 |
T |
|
| Q |
310 |
ccaaaatagtcagaacaagcagctccattctaagaatcgtccttggttgaaatatgtatttggcaccttcaatctacagtttataatatccattacaatt |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26436487 |
ccaaaatagtcagaacaagcagctccattctaagaatcgtccttggttgaaatatgtatttggcaccttcaatctacagtttataatatccattacaatt |
26436586 |
T |
|
| Q |
410 |
ttacaaatgacttagtatcatcatcactatatgcattgac |
449 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
26436587 |
ttacaaatgacttagtatcatcatcactatatgcattgac |
26436626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 178 - 340
Target Start/End: Complemental strand, 15379543 - 15379381
Alignment:
| Q |
178 |
taccttggatattagataagatgatttctgtagcacgtgaaattatgaagtggttgaaagttccagttgaatctagcttgcacgcaaagaaactgaggaa |
277 |
Q |
| |
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|||||||||| ||||||||||| |||| |||||| |||||||| | || | |||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
15379543 |
taccttggattttagataagataatttgtgtagctcgtgaaatgagaaacccagtaaaagttgaagttgaatctaacttgcacgcaaagaaactgaggaa |
15379444 |
T |
|
| Q |
278 |
actaagtggggtgattgatctcagcctccaatccaaaatagtcagaacaagcagctccattct |
340 |
Q |
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|||| |||||| | |||||| |||||||||||||| | | | |||||||| ||||||||||| |
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| T |
15379443 |
gctaaatggggtaactgatcttagcctccaatccaagacacttagaacaagtagctccattct |
15379381 |
T |
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