View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0352-INSERTION-1 (Length: 652)
Name: NF0352-INSERTION-1
Description: NF0352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0352-INSERTION-1 |
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Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 8 - 419
Target Start/End: Complemental strand, 41456407 - 41455999
Alignment:
| Q |
8 |
catttttctgttgtagactcttccatgcgctgccaatcaggttgaaaacaactcagtttctaccgttaattatggagtgattaatttgtcttaatttgca |
107 |
Q |
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| T |
41456407 |
catttttctgt-gtagactcttccatgcgctgccaatcaggttgaaaacaactcagtttctaccgttaattatggagtgattaatttgtcttaatttgca |
41456309 |
T |
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| Q |
108 |
actatgtatattcatgatcatcataaataatcttcactatcaatctatcatgatttgtaactaactactactacggtattagtgatataataagattaat |
207 |
Q |
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| T |
41456308 |
actatgtatattcatgatcatcataaataatcttcactatcaatctatcatgatttgtaactaactactactacggtattagtgatataataagattaat |
41456209 |
T |
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| Q |
208 |
tttcagaccacgtgttctctttttctttaaattttcaacttcttccaagaaaaaatataacacctcttgaannnnnnnncgctaaggtgttattcacggt |
307 |
Q |
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| T |
41456208 |
tttcagaccccgtgttctctttttctttaaattttcaacttcttccaaga-aaaatataacacctcttgaa-tttttttcgctaaggtgttattcacggt |
41456111 |
T |
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| Q |
308 |
ggctaaataagtgattcattgtctaattgactggaaataattctagtcgatgagaaactatacatttagttaatgtatttcagtcannnnnnnatgttcc |
407 |
Q |
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| T |
41456110 |
ggctaaataagtgattcattgtctaattgactggaattaattctagtcgatgagaaactatacatttagttaatgtatttcagtcttttttttatgttcc |
41456011 |
T |
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| Q |
408 |
gttggatgtaat |
419 |
Q |
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| T |
41456010 |
gttggatgtaat |
41455999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 415 - 634
Target Start/End: Complemental strand, 41451679 - 41451461
Alignment:
| Q |
415 |
gtaatgttttgatttgttcttctccttttaactatactggatatatatgcttggactttgaattaaacagaaaaagatatctttcagagaaagctatagg |
514 |
Q |
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||||||||||||||||||||||||||||||||| |||| | || ||||||||| |||||||||||||||| |||||||||||| | |||||| ||||||| |
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| T |
41451679 |
gtaatgttttgatttgttcttctccttttaactgtactaggtacatatgcttgaactttgaattaaacagcaaaagatatcttcctgagaaacctatagg |
41451580 |
T |
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| Q |
515 |
gtgcgatttgtatgatcgtgtaatttaatatgcttgtgtgtcgcgttgttcaacccgcgttggtgtccaatgtatgacacnnnnnnnnatacatgtcaaa |
614 |
Q |
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| T |
41451579 |
gtgcgatttgtatgatcgtgtaatttaatatgcttgtgtgtcgcggtgttcaacccgcgttggtgtccaatgtatgacac-tttttttatacatgtcaaa |
41451481 |
T |
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| Q |
615 |
atcctcatacaagtattcaa |
634 |
Q |
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| T |
41451480 |
aacctcatacaagtattcaa |
41451461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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