View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0352-INSERTION-11 (Length: 438)
Name: NF0352-INSERTION-11
Description: NF0352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0352-INSERTION-11 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 393; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 7 - 438
Target Start/End: Original strand, 44185889 - 44186317
Alignment:
| Q |
7 |
agttttgtctgaaagagaagctttagttaaggatattgctttcagcagcccaaaactgagcaatgttcacaaaatgaatgttcacaatttacctaaggtc |
106 |
Q |
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| T |
44185889 |
agttttgtctgaa-gagaagctttagttaaggatattgctttcagcagcccaaaactgaacaatgttcacaaaatgaatgttcacaagttacctaaggtc |
44185987 |
T |
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| Q |
107 |
taaatccctatgccacaatattaaaacagtattagggaaaataactcattaatctatgtgcatatagattggacatatatttgcatattggaaaacaaaa |
206 |
Q |
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| T |
44185988 |
taaatccctatgccacaatattaaaacagtattagggaaaatgactcattaatctatgtgcatatagattggacatatatttgcatattggaaaacaaaa |
44186087 |
T |
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| Q |
207 |
tggttttacaatcttgtgatgtggactgaatatctcatcacatctaaacaagttgcagctacacaacatacttcgcaagtctatgtatattttagtacct |
306 |
Q |
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| T |
44186088 |
tggttttacaatcttgtgatgtggactgaatatctcatcacatctaaacaagttgcagctacacaacatacttcgcaagtctatgtatattttagtacct |
44186187 |
T |
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| Q |
307 |
atttccaatgaatgatagataacaagctaacaacatatacctatactccatgcaactaaatatccacgctcaaatatgcacactttgaaaaaacagtctt |
406 |
Q |
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| T |
44186188 |
atttccaatgaatgatagataacaagctaacaacatatacc--tactccatgcaactaaatatccacgctcaaatatgcacactttgaaaaaacagtctt |
44186285 |
T |
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| Q |
407 |
aatctccaaatagttaacacaaatacaggata |
438 |
Q |
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| T |
44186286 |
aatctccaaataattaacacaaatacaagata |
44186317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 44191953 - 44192003
Alignment:
| Q |
81 |
tgaatgttcacaatttacctaaggtctaaatccctatgccacaatattaaa |
131 |
Q |
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| T |
44191953 |
tgaatgttcacaagttacctaaagtctaaatccctatgccacaatattaaa |
44192003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 342
Target Start/End: Original strand, 40397620 - 40397673
Alignment:
| Q |
289 |
atgtatattttagtacctatttccaatgaatgatagataacaagctaacaacat |
342 |
Q |
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| T |
40397620 |
atgtacattttagtacctattttcaatcaatgagaaataacaagcaaacaacat |
40397673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 289 - 343
Target Start/End: Original strand, 19162652 - 19162706
Alignment:
| Q |
289 |
atgtatattttagtacctatttccaatgaatgatagataacaagctaacaacata |
343 |
Q |
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| T |
19162652 |
atgtatattttagtacctacgtccaatcaatgatagataacaagctaacaacata |
19162706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 264
Target Start/End: Complemental strand, 30742357 - 30742318
Alignment:
| Q |
225 |
atgtggactgaatatctcatcacatctaaacaagttgcag |
264 |
Q |
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| T |
30742357 |
atgtggactgaatatctcatcacttttaaacaagttgcag |
30742318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 278
Target Start/End: Complemental strand, 27186054 - 27186025
Alignment:
| Q |
249 |
tctaaacaagttgcagctacacaacatact |
278 |
Q |
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| T |
27186054 |
tctaaacaagttgcagctacacaacatact |
27186025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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