View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0352-INSERTION-12 (Length: 708)

Name: NF0352-INSERTION-12
Description: NF0352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0352-INSERTION-12
NF0352-INSERTION-12
[»] chr1 (2 HSPs)
chr1 (310-708)||(30826870-30827254)
chr1 (17-316)||(30825945-30826239)
[»] chr6 (2 HSPs)
chr6 (440-559)||(21291422-21291541)
chr6 (18-117)||(21290262-21290361)
[»] chr5 (4 HSPs)
chr5 (440-559)||(3754327-3754446)
chr5 (440-559)||(14637222-14637341)
chr5 (18-117)||(3753175-3753274)
chr5 (18-117)||(14636070-14636169)
[»] chr4 (3 HSPs)
chr4 (440-559)||(7649897-7650016)
chr4 (18-117)||(7648737-7648836)
chr4 (441-559)||(11993954-11994072)
[»] chr3 (5 HSPs)
chr3 (440-618)||(51600958-51601135)
chr3 (440-559)||(29027144-29027263)
chr3 (18-117)||(51604232-51604331)
chr3 (18-61)||(29025984-29026027)
chr3 (319-364)||(51600837-51600882)


Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 310 - 708
Target Start/End: Original strand, 30826870 - 30827254
Alignment:
Q  310 attaagcatacgcaacacacggactagtggttcagtgagtttcactatatcagcagatttactccagaatccagaatctaaaacatcctccacagannnn 409  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |        
T  30826870 attaaccatacgcaacacacggactagtggttcagtgagtttcactatatcggcagatttactccagaatccagaatctaaaacgtcctccacaaatttt 30826969  T
Q  410 nnnncctttacttctctggcatatgctgaggttgtccattcattagatgttaccatgcctcttgaggaattcttttgagctaaaatactttgcaaagcaa 509  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30826970 tttgcctttacttctctggcatatgctgaggttgtccattcattagatgttaccatgcctcttgaggaattcttttgagctaaaatactttgcaaagcaa 30827069  T
Q  510 tgaaattagtagcaaaccgagttgttgcaggacgaaggatttctcttccacctgtatgctttctcatcaaatacaaggcataacaaatgattataaagat 609  Q
    |||||||||||||||||||||||| |||||||||||             ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  30827070 tgaaattagtagcaaaccgagttggtgcaggacgaa-------------acctgtatgctttctcatcaaatacaaggcataacaa-tgattataaagat 30827155  T
Q  610 atttggtaatactagcagcttgtgacacaactacttcaacttcttccaactttgattttgcacttgatcacaagatctcatattgatctccttgagttg 708  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30827156 atttagtaatactagcagcttgtgacacaactacttcaacttcttccaactttgattttgcacttgatcacaagatctcatattgatctccttgagttg 30827254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 17 - 316
Target Start/End: Original strand, 30825945 - 30826239
Alignment:
Q  17 gtcatttgatattggttggatggtcatatttgcaagatcattgcgcaatgcttccatctcttcatttattaagaggggtggtgaatcctccaatacccaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30825945 gtcatttgatattggttggatggtcatatttgcaagatcattgcgcaatgcttccatctcttcatttgttaagaggggtggtgaatcctccaatacccaa 30826044  T
Q  117 tcagaatggtcaccaagtgtttaagcatttgtagggtcataactttgatgtctactctacttttcctaaacacatgtagattaaatctaagcacatgtat 216  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||    
T  30826045 tcagaatggtcaccaagtgtttcagcatttgtagggtcataactttgatg-----tctacttttcctaaacacatgtagattaaatctaagcacatgtat 30826139  T
Q  217 ttaaatatagcaagacaaataaatggttaaagaaaaataaacataaaaatacctattctcgagcctcatgttgtaacgaacaaagactaaatcattaagc 316  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30826140 ttaaatataacaagacaaataaatggttaaagaaaaataaacataaaaatacctattctcgagcctcatgttgtaacgaacaaagactaaatcattaagc 30826239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 440 - 559
Target Start/End: Original strand, 21291422 - 21291541
Alignment:
Q  440 gttgtccattcattagatgttaccatgcctcttgaggaattcttttgagctaaaatactttgcaaagcaatgaaattagtagcaaaccgagttgttgcag 539  Q
    ||||||||||| | ||||||||||||| ||||    | ||| || ||||  |||||||| |||||||||||||||||||| ||||| |||||||  ||||    
T  21291422 gttgtccattcttgagatgttaccatggctctaagtgcatttttctgagacaaaatactctgcaaagcaatgaaattagtggcaaagcgagttggagcag 21291521  T
Q  540 gacgaaggatttctcttcca 559  Q
    ||||||| || |||||||||    
T  21291522 gacgaagtatctctcttcca 21291541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 21290262 - 21290361
Alignment:
Q  18 tcatttgatattggttggatggtcatatttgcaagatcattgcgcaatgcttccatctcttcatttattaagaggggtggtgaatcctccaatacccaat 117  Q
    |||||||| || ||||||||||||||||| |||||||||||||| |||| ||||| ||| |||  | |||| |  || |||||||||||||| |||||||    
T  21290262 tcatttgaaataggttggatggtcatattggcaagatcattgcgtaatgattccaactcctcaactgttaaaaatggcggtgaatcctccaacacccaat 21290361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 440 - 559
Target Start/End: Original strand, 3754327 - 3754446
Alignment:
Q  440 gttgtccattcattagatgttaccatgcctcttgaggaattcttttgagctaaaatactttgcaaagcaatgaaattagtagcaaaccgagttgttgcag 539  Q
    ||||||||||| | ||||||||||||| ||||    | ||| || ||||  |||||||| |||||||||||||||||||| ||||| |||||||  ||||    
T  3754327 gttgtccattcttgagatgttaccatggctctaagtgcatttttctgagacaaaatactctgcaaagcaatgaaattagtggcaaagcgagttggagcag 3754426  T
Q  540 gacgaaggatttctcttcca 559  Q
    ||||||| || |||||||||    
T  3754427 gacgaagtatctctcttcca 3754446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 440 - 559
Target Start/End: Original strand, 14637222 - 14637341
Alignment:
Q  440 gttgtccattcattagatgttaccatgcctcttgaggaattcttttgagctaaaatactttgcaaagcaatgaaattagtagcaaaccgagttgttgcag 539  Q
    ||||||||||| | ||||||||||||| ||||    | ||| || ||||  |||||||| |||||||||||||||||||| ||||| |||||||  ||||    
T  14637222 gttgtccattcttgagatgttaccatggctctaagtgcatttttctgagacaaaatactctgcaaagcaatgaaattagtggcaaagcgagttggagcag 14637321  T
Q  540 gacgaaggatttctcttcca 559  Q
    ||||||| || |||||||||    
T  14637322 gacgaagtatctctcttcca 14637341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 3753175 - 3753274
Alignment:
Q  18 tcatttgatattggttggatggtcatatttgcaagatcattgcgcaatgcttccatctcttcatttattaagaggggtggtgaatcctccaatacccaat 117  Q
    |||||||| || ||||||||||||||||| |||||||||||||| |||| ||||| ||| |||  | |||| |  || |||||||||||||| |||||||    
T  3753175 tcatttgaaataggttggatggtcatattggcaagatcattgcgtaatgattccaactcctcaactgttaaaaatggcggtgaatcctccaacacccaat 3753274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 14636070 - 14636169
Alignment:
Q  18 tcatttgatattggttggatggtcatatttgcaagatcattgcgcaatgcttccatctcttcatttattaagaggggtggtgaatcctccaatacccaat 117  Q
    |||||||| || ||||||||||||||||| |||||||||||||| |||| ||||| ||| |||  | |||| |  || |||||||||||||| |||||||    
T  14636070 tcatttgaaataggttggatggtcatattggcaagatcattgcgtaatgattccaactcctcaactgttaaaaatggcggtgaatcctccaacacccaat 14636169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 440 - 559
Target Start/End: Original strand, 7649897 - 7650016
Alignment:
Q  440 gttgtccattcattagatgttaccatgcctcttgaggaattcttttgagctaaaatactttgcaaagcaatgaaattagtagcaaaccgagttgttgcag 539  Q
    ||||||||||| | ||||||||||||| ||||    | ||| || ||||  |||||||| |||||||||||||||||||| ||||| |||||||  ||||    
T  7649897 gttgtccattcttgagatgttaccatggctctaagtgcatttttctgagacaaaatactctgcaaagcaatgaaattagtggcaaagcgagttggagcag 7649996  T
Q  540 gacgaaggatttctcttcca 559  Q
    ||||||| || |||||||||    
T  7649997 gacgaagtatctctcttcca 7650016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 7648737 - 7648836
Alignment:
Q  18 tcatttgatattggttggatggtcatatttgcaagatcattgcgcaatgcttccatctcttcatttattaagaggggtggtgaatcctccaatacccaat 117  Q
    |||||||| || ||||||||||||||||| |||||||||||||| |||| ||||| ||| |||  | |||| |  || |||||||||||||| |||||||    
T  7648737 tcatttgaaataggttggatggtcatattggcaagatcattgcgtaatgattccaactcctcaactgttaaaaatggcggtgaatcctccaacacccaat 7648836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 559
Target Start/End: Complemental strand, 11994072 - 11993954
Alignment:
Q  441 ttgtccattcattagatgttaccatgcctcttgaggaattcttttgagctaaaatactttgcaaagcaatgaaattagtagcaaaccgagttgttgcagg 540  Q
    ||||||| || | ||||||||||||| |||| |  | ||| || ||||  |||||||| | |||||||||||||||||| ||||| |||||||  ||| |    
T  11994072 ttgtccactcttgagatgttaccatggctctaggtgcatttttctgagacaaaatactctacaaagcaatgaaattagtggcaaagcgagttggagcaag 11993973  T
Q  541 acgaaggatttctcttcca 559  Q
    |||||  |||| |||||||    
T  11993972 acgaaatatttatcttcca 11993954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 440 - 618
Target Start/End: Original strand, 51600958 - 51601135
Alignment:
Q  440 gttgtccattcattagatgttaccatgcctcttgaggaattcttttgagctaaaatactttgcaaagcaatgaaattagtagcaaaccgagttgttgcag 539  Q
    ||||||||||| | ||||||||||||| ||||    | ||| || ||||  |||||||| |||||||||||||||||||| ||||| |||||||  ||||    
T  51600958 gttgtccattcttgagatgttaccatggctctaagtgcatttttctgagacaaaatactctgcaaagcaatgaaattagtggcaaagcgagttggagcag 51601057  T
Q  540 gacgaaggatttctcttccacctgtatgctttctcatcaaatacaaggcataacaaatgattataaagatatttggtaa 618  Q
    ||| ||| || |||||||||   |||   || |||||||||||||| | ||||| |||||||||| | ||| |||||||    
T  51601058 gacaaagtatctctcttccatgagtaaatttcctcatcaaatacaatggataac-aatgattatatacatacttggtaa 51601135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 440 - 559
Target Start/End: Original strand, 29027144 - 29027263
Alignment:
Q  440 gttgtccattcattagatgttaccatgcctcttgaggaattcttttgagctaaaatactttgcaaagcaatgaaattagtagcaaaccgagttgttgcag 539  Q
    ||||||||||| | ||||||||||||| ||||    | ||| || ||||  |||||||| |||||||||||||||||| | ||||| |||||||  ||||    
T  29027144 gttgtccattcttgagatgttaccatggctctaagtgcatttttctgagacaaaatactctgcaaagcaatgaaattactggcaaagcgagttggagcag 29027243  T
Q  540 gacgaaggatttctcttcca 559  Q
    ||||||| || |||||||||    
T  29027244 gacgaagtatctctcttcca 29027263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 51604232 - 51604331
Alignment:
Q  18 tcatttgatattggttggatggtcatatttgcaagatcattgcgcaatgcttccatctcttcatttattaagaggggtggtgaatcctccaatacccaat 117  Q
    |||||||| || ||||||||||||||||| |||||||||||||| |||| ||||| ||| |||  | |||| |  || |||||||||||||| |||||||    
T  51604232 tcatttgaaataggttggatggtcatattggcaagatcattgcgtaatgattccaactcctcaactgttaaaaatggcggtgaatcctccaacacccaat 51604331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 29025984 - 29026027
Alignment:
Q  18 tcatttgatattggttggatggtcatatttgcaagatcattgcg 61  Q
    |||||||| || ||||||||||||||||| ||||||||||||||    
T  29025984 tcatttgaaataggttggatggtcatattggcaagatcattgcg 29026027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 319 - 364
Target Start/End: Original strand, 51600837 - 51600882
Alignment:
Q  319 acgcaacacacggactagtggttcagtgagtttcactatatcagca 364  Q
    |||||||||||| || |||||||| |||||||||||||| ||||||    
T  51600837 acgcaacacacgtacaagtggttctgtgagtttcactatgtcagca 51600882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University