View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0352-INSERTION-14 (Length: 549)
Name: NF0352-INSERTION-14
Description: NF0352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0352-INSERTION-14 |
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Alignment Details
Target: chr3 (Bit Score: 106; Significance: 9e-53; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 81 - 403
Target Start/End: Complemental strand, 374916 - 374580
Alignment:
| Q |
81 |
gttgtcaaaattctatctgggttttgagnnnnnnngtgggg-taatgttactcattctatttggttctagtttttcatnnnnnnnnttaatttttcttga |
179 |
Q |
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| T |
374916 |
gttgtcaaaattctatctgggttttgagtttttttctgggggtaatgttactcattctatttggttctagtttttcataaaaaaaattaatttttcttga |
374817 |
T |
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| Q |
180 |
atgaactatatgttttttgtatttcatttgtcnnnnnnnnnnnnttgttttttgtattt--------------ttctcaaaatcctatctgggtttttgg |
265 |
Q |
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| T |
374816 |
ttgaattatatgttttttgtatttcatttgtcaaaaaaaaa----tgttttttgtatttcaaagtttgaaagtttctcaaaatcctatctgggtttttgg |
374721 |
T |
|
| Q |
266 |
annnnnnnnagcggtaatgttcttcattctaatggattttaattttactatgattgaatagaaaaa---cnnnnnnnnnnngtcaaaaacccatctgggt |
362 |
Q |
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| T |
374720 |
attttttttagcggtaatgttcttcattctaatgtattttaattttactatgattgaatagaaaaaactaattttttttttgtcaaaaacccatctgggt |
374621 |
T |
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| Q |
363 |
ttgaaattttttgagggggtaatgttattcattctattggg |
403 |
Q |
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| T |
374620 |
ttgaaattttttgagggggtaatgttattcattctattggg |
374580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 463 - 536
Target Start/End: Complemental strand, 374520 - 374447
Alignment:
| Q |
463 |
gttctcaaagtttatcaaaacttgggttttcagtcatttgttgagatttttgagccattcttttagacttaatt |
536 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
374520 |
gttctcaaagtttatcaaaacttgggttttcagtcatttgttgagatttttgagccattcttttagacttaatt |
374447 |
T |
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