View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0352-INSERTION-15 (Length: 467)
Name: NF0352-INSERTION-15
Description: NF0352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0352-INSERTION-15 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 8 - 467
Target Start/End: Original strand, 13414362 - 13414825
Alignment:
| Q |
8 |
tatagcatatacggtataaacatattatgtacattagttttaccttgcaagacttaaactttgaaaagttgcatgaatattcaccatatccgaactaagc |
107 |
Q |
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| T |
13414362 |
tatagcatatacggtataaacatattatgtacattagttttacctcgcaagacttaaactttgaaaagttgcatgaatattcaccatatccgaactaagc |
13414461 |
T |
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| Q |
108 |
caaaaaatgtgtgtctgtcaccatgtgctactttggatgatacttatttgttctcgttgaaaattggctaaaaatttgatg-----ttgaagggttgtca |
202 |
Q |
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| T |
13414462 |
caaaaaatgtgtgtctgtcaccatgtactactttggatgatacttatttgttttcgttgaaaattggctaaaaatttgatgttgaattgaagggttgtca |
13414561 |
T |
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| Q |
203 |
aaaatcacagcgtgattgatcttaattgtggcacgatttggttgagcaatttgaaggttttggtttacaaaaattcgttctacgattgggtcaaatcgta |
302 |
Q |
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| T |
13414562 |
aaaatcacagcgtgattgattttaatcgtggcacgatttggttgagcaatttgaaggtttt-gttcacaaaaattcgttctacgattgggttaaatcgta |
13414660 |
T |
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| Q |
303 |
acacaattttggattaggtttagtactatattgtggtacgagctctaaatcgtggtgtgattcagacaaattgtagcacgattttgatggaatttgagta |
402 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
13414661 |
acacgattttggattaggtttagtactatattgtggtacgagctctaaatcgtggtgtgattcagacaaattgtagcgcgattttgatgggatttgagta |
13414760 |
T |
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| Q |
403 |
atatataagtctccattcttcaattttttcgatggcttctataaagagaattctgtcaaatcaaa |
467 |
Q |
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| T |
13414761 |
atatataagccttcattcttcaattctttcggtggcttctataaagagaattctgtcaaatcaaa |
13414825 |
T |
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