View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0352-INSERTION-3 (Length: 661)
Name: NF0352-INSERTION-3
Description: NF0352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0352-INSERTION-3 |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold0127 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 533; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 8 - 661
Target Start/End: Original strand, 26609648 - 26610298
Alignment:
| Q |
8 |
tgactttgtgattctcattctttggcttgtggacaagataatggtctaccattagtaataaaataagtaagatattagcttgacattagcatttgttagt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26609648 |
tgactttgtgattctcattctttggcttgtggacaagataatggtctaccattagtaataaaataagtaagatattagcttgacattagcatttgttagt |
26609747 |
T |
|
| Q |
108 |
taatgacatgattcattagggaatgatacgatggagatggatctatacagctcacaaaagtcttcagatttgttttcatcgtggctgcctaatcctacct |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26609748 |
taatgacatgattcattagggaatgatacgatggagatggatctatacagctcacaaaagtcttcagatttgttttcatcgtggctgcctaatcctacct |
26609847 |
T |
|
| Q |
208 |
tgaacatgacatcttatcatgccacaattaacaactcaagtttcatatagaaaataaataagtgaattaactataatcaacgagtgtgtgttgaaggtag |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
26609848 |
tgaacatgacatcttatcatgccacaattaacaactcaagtttcatatagaaaataaataagtgaattatctataatcaatgagtgtgtgttgaaggtag |
26609947 |
T |
|
| Q |
308 |
gtcttggatatgtggtgagtgcattcgtgtctttattggtgtttattttgtgtgttctgtctacatacgacatctttgtagtctctgatttaccgatctc |
407 |
Q |
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||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26609948 |
gtcttggatatgtggggagtgcattcgtgtctttgttggtgtttattttgtgtgttctgtttacatacgacatctttgtagtctctgatttaccgatctc |
26610047 |
T |
|
| Q |
408 |
tgttcatgttgagcatagatttaggttttaataaattttgccgttgnnnnnnntagttgtctaagtgtatggttttaaatcgtggtggcggtcacagcat |
507 |
Q |
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||||||||||||||| ||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||| | | |
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| T |
26610048 |
tgttcatgttgagcagagatttaggttataataaattttgccgttgaaaaaaa-agttgtttaagtgtatggttttaaatcgtggtgtcggtcacaacgt |
26610146 |
T |
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| Q |
508 |
aaaccttcatattgcgaaaaatatggtcaatgtagttgcaatgttgttttggagacctcaaaatcttcaatagtacannnnnnnnnaagggaaatagtac |
607 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
26610147 |
aaaccttcatattgcgaaaaatgtggtcaatgtagttgcaatgttgttttggagacctcaaaatcttcaatagtaca--tttttttaagggaaatagtac |
26610244 |
T |
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| Q |
608 |
agttgtagactataatttaaaccaatgggtgtaccggttatgtggatttatgta |
661 |
Q |
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||||||||||| ||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
26610245 |
agttgtagactgtaatttaaaacaatggttgtaccggttatgtggatttatgta |
26610298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 412
Target Start/End: Complemental strand, 8987700 - 8987582
Alignment:
| Q |
295 |
gtgttgaaggtaggtcttggatatgtggtgagtgca-ttcgtgtctttattggtgtttattttgtgtgttctgtctacatacgacatctttgtagtctct |
393 |
Q |
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| T |
8987700 |
gtgttgaaggtaggtcttaggtgggtgctgtgtgtatttcgtgtctttattggtgtttattttgggtgttccgcatatatatggtgccttcgtagtctct |
8987601 |
T |
|
| Q |
394 |
gatttaccgatctctgttc |
412 |
Q |
| |
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|||||||| |||||||||| |
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| T |
8987600 |
gatttaccaatctctgttc |
8987582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 330 - 450
Target Start/End: Complemental strand, 21301 - 21181
Alignment:
| Q |
330 |
attcgtgtctttattggtgtttattttgtgtgttctgtctacatacgacatctttgtagtctctgatttaccgatctctgttcatgttgagcatagattt |
429 |
Q |
| |
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|||||||||||||||| |||| |||||| |||||| | ||| |||||||| |||||||||||||||||||| | | | ||||| | ||| ||| |||| |
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| T |
21301 |
attcgtgtctttattgatgttcattttgggtgttccgcctatatacgacacctttgtagtctctgatttacaggtttttgttcgtcttgtgcagagatcg |
21202 |
T |
|
| Q |
430 |
aggttttaataaattttgccg |
450 |
Q |
| |
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|| ||| |||||||||||||| |
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| T |
21201 |
agttttaaataaattttgccg |
21181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 341 - 420
Target Start/End: Original strand, 21029981 - 21030060
Alignment:
| Q |
341 |
tattggtgtttattttgtgtgttctgtctacatacgacatctttgtagtctctgatttaccgatctctgttcatgttgag |
420 |
Q |
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| T |
21029981 |
tattggtgtttattttgggtgttccgcctacatacggcacctttgtagtctttgatttaccggtctcgattcatgttgag |
21030060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 391
Target Start/End: Original strand, 5746925 - 5747022
Alignment:
| Q |
295 |
gtgttgaaggtaggtcttggatatgtggtgagtgca-ttcgtgtctttattggtgtttattttgtgtgttctgtctacatacgacatctttgtagtct |
391 |
Q |
| |
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|||||||||||||||||| | || ||| || ||| | ||||||||||||||| |||| ||||| |||||| | ||| ||||||| ||||||||||| |
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| T |
5746925 |
gtgttgaaggtaggtcttaggtaggtgatgtgtgtaattcgtgtctttattgatgttcattttaggtgttccgcctatatacgacgcctttgtagtct |
5747022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 295 - 408
Target Start/End: Complemental strand, 33283733 - 33283620
Alignment:
| Q |
295 |
gtgttgaaggtaggtcttggatatgtggtgagtgcattcgtgtctttattggtgtttattttgtgtgttctgtctacatacgacatctttgtagtctctg |
394 |
Q |
| |
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|||||||| ||||||||||||| ||| || | |||||||| ||||| ||||||||||||| ||||| ||||| |||| || ||||| || |||||| |
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| T |
33283733 |
gtgttgaaattaggtcttggataggtgatgtaggtattcgtgtttttatcggtgtttattttggatgttccgtctatatacaacgtctttataatctctg |
33283634 |
T |
|
| Q |
395 |
atttaccgatctct |
408 |
Q |
| |
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|||||||||||||| |
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| T |
33283633 |
atttaccgatctct |
33283620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 334 - 422
Target Start/End: Complemental strand, 43344593 - 43344505
Alignment:
| Q |
334 |
gtgtctttattggtgtttattttgtgtgttctgtctacatacgacatctttgtagtctctgatttaccgatctctgttcatgttgagca |
422 |
Q |
| |
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|||||||||||||||||||||||| || ||| | ||| ||||| || ||||||||||||| ||||||| ||||| ||| | ||||||| |
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| T |
43344593 |
gtgtctttattggtgtttattttgagttttccgcctatatacggcacatttgtagtctctggtttaccggtctctattcgtcttgagca |
43344505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 382 - 442
Target Start/End: Complemental strand, 15817072 - 15817012
Alignment:
| Q |
382 |
tttgtagtctctgatttaccgatctctgttcatgttgagcatagatttaggttttaataaa |
442 |
Q |
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|||||||||||| ||| || | ||||||||||| ||||||| |||| ||| |||||||||| |
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| T |
15817072 |
tttgtagtctctaattgactggtctctgttcatcttgagcagagatctagtttttaataaa |
15817012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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