View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0352-INSERTION-5 (Length: 400)

Name: NF0352-INSERTION-5
Description: NF0352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0352-INSERTION-5
NF0352-INSERTION-5
[»] chr2 (1 HSPs)
chr2 (7-397)||(45345166-45345553)
[»] chr7 (1 HSPs)
chr7 (93-167)||(34190042-34190116)
[»] chr5 (2 HSPs)
chr5 (11-59)||(33361723-33361771)
chr5 (12-59)||(33543249-33543296)
[»] chr3 (4 HSPs)
chr3 (79-182)||(1374119-1374222)
chr3 (100-176)||(9579487-9579563)
chr3 (106-149)||(20545415-20545458)
chr3 (286-338)||(654773-654825)
[»] chr1 (2 HSPs)
chr1 (103-182)||(34591153-34591232)
chr1 (91-183)||(47144702-47144794)
[»] chr8 (2 HSPs)
chr8 (100-149)||(30827744-30827793)
chr8 (112-149)||(40609865-40609902)
[»] chr4 (1 HSPs)
chr4 (118-194)||(34600144-34600220)


Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 7 - 397
Target Start/End: Complemental strand, 45345553 - 45345166
Alignment:
Q  7 agtttcaacggtttggtcataatatcagctacttgatttcttgtgttacaatggaccagcttcaccacttcttctttagtgagatctctcaagaaatgga 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  45345553 agtttcaacggtttggtcataatatcagctacttgatttcttgtgttacaatggaccagtttcaccacttcttctttagtgagatctctcaagaaatgga 45345454  T
Q  107 accttacatctatatgtttacttctaccatgcatgactggatttttggataatttaattgttgaactgttgtcacacataataacagtacacttgttttg 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  45345453 accttacatctatatgtttacttctaccatgcatgactggattttaggataatttaattgttgaactgttgtcacacatagtaacagtacacttgttttg 45345354  T
Q  207 tgagagcccaatcttctccaacacccttctcatccacacacattggcaagcacaagaggaggctgccacaaactctgcctcagtggtggacaatgttaca 306  Q
    |||||||||||   ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45345353 tgagagcccaa---tctccaacacccttctcatccacacacattggctagcacaagaggaggctgccacaaactctgcctcagtggtggacaatgttaca 45345257  T
Q  307 acaggctgcttctttgatgcccatgagactgctccaccagacagtaaaaatacataaccggatgtgcttcttctatcatcaatatctccag 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||    
T  45345256 acaggctgcttctttgatgcccatgagactgctccaccagacagtaaaaatacataatcggatgtggtccttctatcatcaatatctccag 45345166  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 93 - 167
Target Start/End: Complemental strand, 34190116 - 34190042
Alignment:
Q  93 tctcaagaaatggaaccttacatctatatgtttacttctaccatgcatgactggatttttggataatttaattgt 167  Q
    |||||| ||||| ||||| ||||| |||||||| ||||| |||||||  ||||||||||| ||||||||||||||    
T  34190116 tctcaaaaaatgaaacctgacatcaatatgtttgcttcttccatgcaaaactggattttttgataatttaattgt 34190042  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 33361723 - 33361771
Alignment:
Q  11 tcaacggtttggtcataatatcagctacttgatttcttgtgttacaatg 59  Q
    |||||||||| |||| |||||||||||||||||| ||||||||||||||    
T  33361723 tcaacggtttagtcacaatatcagctacttgattgcttgtgttacaatg 33361771  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 33543296 - 33543249
Alignment:
Q  12 caacggtttggtcataatatcagctacttgatttcttgtgttacaatg 59  Q
    |||||||||||||| ||||||||||||| |||| ||||||||||||||    
T  33543296 caacggtttggtcacaatatcagctactcgattgcttgtgttacaatg 33543249  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 79 - 182
Target Start/End: Complemental strand, 1374222 - 1374119
Alignment:
Q  79 tctttagtgagatctctcaagaaatggaaccttacatctatatgtttacttctaccatgcatgactggatttttggataatttaattgttgaactgttgt 178  Q
    |||||| | ||||| | |||||| |||||||| ||||| || ||||| ||||| || ||||| || ||||||||||| || |||||||| |||||||| |    
T  1374222 tctttaattagatcacacaagaagtggaacctcacatcgatgtgtttgcttcttccgtgcataacaggatttttggacaacttaattgtggaactgttat 1374123  T
Q  179 caca 182  Q
    ||||    
T  1374122 caca 1374119  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 176
Target Start/End: Original strand, 9579487 - 9579563
Alignment:
Q  100 aaatggaaccttacatctatatgtttacttctaccatgcatgactggatttttggataatttaattgttgaactgtt 176  Q
    ||||| ||||| ||||| || ||||||||||| ||||| |  ||||||||||| || |||||||| |||||||||||    
T  9579487 aaatgaaacctcacatcaatgtgtttacttcttccatgtagaactggattttttgacaatttaatagttgaactgtt 9579563  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 106 - 149
Target Start/End: Complemental strand, 20545458 - 20545415
Alignment:
Q  106 aaccttacatctatatgtttacttctaccatgcatgactggatt 149  Q
    ||||| |||||||||||||| | |||||||||||||||||||||    
T  20545458 aacctgacatctatatgtttgcatctaccatgcatgactggatt 20545415  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 338
Target Start/End: Original strand, 654773 - 654825
Alignment:
Q  286 tcagtggtggacaatgttacaacaggctgcttctttgatgcccatgagactgc 338  Q
    |||||||| || ||||| || ||| ||||||||||||||||||| ||||||||    
T  654773 tcagtggtagataatgtaactacaagctgcttctttgatgcccaagagactgc 654825  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 103 - 182
Target Start/End: Complemental strand, 34591232 - 34591153
Alignment:
Q  103 tggaaccttacatctatatgtttacttctaccatgcatgactggatttttggataatttaattgttgaactgttgtcaca 182  Q
    |||||||| ||||| || |||||||| || |||||||||||||||||||| || || ||  ||| |||||| ||||||||    
T  34591232 tggaacctgacatcaatgtgtttactccttccatgcatgactggatttttcgacaactttgttgatgaactattgtcaca 34591153  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 91 - 183
Target Start/End: Complemental strand, 47144794 - 47144702
Alignment:
Q  91 tctctcaagaaatggaaccttacatctatatgtttacttctaccatgcatgactggatttttggataatttaattgttgaactgttgtcacac 183  Q
    ||||| |||||||| ||||| ||||||||||| || | ||| |||||||| |||||||| || ||||  || |||| ||| || |||||||||    
T  47144794 tctcttaagaaatgaaacctcacatctatatgcttgcatctcccatgcataactggattcttagatagctttattgatgagctattgtcacac 47144702  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 149
Target Start/End: Original strand, 30827744 - 30827793
Alignment:
Q  100 aaatggaaccttacatctatatgtttacttctaccatgcatgactggatt 149  Q
    ||||| || ||||||||||||||||||||| | |||||||| ||||||||    
T  30827744 aaatgaaatcttacatctatatgtttactttttccatgcataactggatt 30827793  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 40609865 - 40609902
Alignment:
Q  112 acatctatatgtttacttctaccatgcatgactggatt 149  Q
    |||||||||||||| | |||||||||||||||||||||    
T  40609865 acatctatatgtttgcatctaccatgcatgactggatt 40609902  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 194
Target Start/End: Complemental strand, 34600220 - 34600144
Alignment:
Q  118 atatgtttacttctaccatgcatgactggatttttggataatttaattgttgaactgttgtcacacataataacagt 194  Q
    |||||||| || || |||||||| ||||||||||| || | ||||| ||||||  |||| |||||||| ||||||||    
T  34600220 atatgtttgctccttccatgcattactggattttttgaaagtttaactgttgaggtgttatcacacattataacagt 34600144  T

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