View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0352-INSERTION-6 (Length: 699)
Name: NF0352-INSERTION-6
Description: NF0352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0352-INSERTION-6 |
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Alignment Details
Target: chr1 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 59 - 690
Target Start/End: Complemental strand, 14360510 - 14359873
Alignment:
| Q |
59 |
aactaagcaggtgtgtccgtggatttggaacaattgctatagaaaaacaaaaatgtcaagtgttgcatgata------tcttgttcaccaataatatcat |
152 |
Q |
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| T |
14360510 |
aactaagcaggtgtgtcagtggatttggaacaattgctatagaaaaacaaaaatgtcaagtgttgcatgatagtagtatcttgctcaccaataatatcat |
14360411 |
T |
|
| Q |
153 |
atcatgctttaatatgtcgagcaaacattttcagtgaagtaaaaa-ttacatgttttaaatttataataccttaattcaatagagctgacaatggaacct |
251 |
Q |
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| T |
14360410 |
atcatgctttaatatgtttagcaaacattttcagtgaagtaaaaaattacatgttttaaatatataataccttaattcaatagagctaacaacagaacct |
14360311 |
T |
|
| Q |
252 |
attgatggaagaacaaatataggtgtaacaaaggatatggaaccaatatgttgttgttttactgctgaaatgactgatataattttcaatcttgtactga |
351 |
Q |
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||||||||||||||| ||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||| |||| |||||||||||| |||||| |
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| T |
14360310 |
attgatggaagaacagatataggtgtaacaa-ggatttggaaccaatatgttgtcgttttactgctgaaatgaccgatacaattttcaatctagtactgg |
14360212 |
T |
|
| Q |
352 |
gaatataaaattgactaacaagactcaattgattagattggttgcaaactgaaatattctttcttcttgaaggcaagctgactgtgcatcagaacattac |
451 |
Q |
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| T |
14360211 |
gaagataaaattgacaaacaagactcaattgattagattggttgcaaactgaaatattcttgcttcttgaaggcaagctgactgtgcatcagaacattgc |
14360112 |
T |
|
| Q |
452 |
ttttggtaaattgtcattccaatgtttgtttccagcgtgcttgtcatggacaannnnnnnacaaaatatcaaagaagaaacctggttttaaatacagttt |
551 |
Q |
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| T |
14360111 |
ttttggtaaattgtcattccaatgtttgttttcagcgtgcttgtcatggacaatttttttacaaaatatcaaagaagaaacctggttttaaatacagttt |
14360012 |
T |
|
| Q |
552 |
ggaaactggtttgacataaccaaacaggaagacttctggtttggttttgaaatgcaatccttattatttagtctcaatttgtatataatttggttcaatg |
651 |
Q |
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| T |
14360011 |
ggaaactggtttgacataaccaaacaggaagacatctggttcggttttgaaatgcaatccttattatttagtttcaatttggatatagtttgattcagtg |
14359912 |
T |
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| Q |
652 |
aatatcaaatttatgtacacatacactcctaattacaat |
690 |
Q |
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|||||| | ||||||||||| || ||| |||||| |||| |
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| T |
14359911 |
aatatccagtttatgtacacgtaaacttctaattgcaat |
14359873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 277
Target Start/End: Original strand, 25207967 - 25208038
Alignment:
| Q |
206 |
tttaaatttataataccttaattcaatagagctgacaatggaacctattgatggaagaacaaatataggtgt |
277 |
Q |
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||||||||||| ||||||||| ||| |||||| || |||| |||| |||||||||||||| ||| |||||| |
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| T |
25207967 |
tttaaatttatgataccttaagtcagtagagccaactatgggaccttttgatggaagaacagataaaggtgt |
25208038 |
T |
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