View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0354_high_5 (Length: 249)
Name: NF0354_high_5
Description: NF0354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0354_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 28 - 154
Target Start/End: Original strand, 26578154 - 26578280
Alignment:
| Q |
28 |
gtatatctagtttcagcatcatttaagatttgataaaagtagtacacaactctttctgttccatcattttcaggcaatgcaagcaagttgccaacttaat |
127 |
Q |
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| T |
26578154 |
gtatatctagtttcagcatcatttaagatttgactaaggtagtacacaactctttctgttccatcattttcaggcaatgcaagcaagttgtcaacttaat |
26578253 |
T |
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| Q |
128 |
agtcttcaatagcattggaaaacttga |
154 |
Q |
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|||||||||||||| |||||||||||| |
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| T |
26578254 |
agtcttcaatagcactggaaaacttga |
26578280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 151 - 249
Target Start/End: Original strand, 26578311 - 26578409
Alignment:
| Q |
151 |
ttgatggaatatccaaagcatctttaatcccatcaaaggatttctagtggttggctcccaatatcattttttctcactaaaaatttgatatgacactcc |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
26578311 |
ttgatggaatatccaaagcatctttaatcccatcaaaggatttctagtggttggctcccaatatcattttttctcaataaaaatttgatatgaaactcc |
26578409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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