View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0354_low_1 (Length: 578)
Name: NF0354_low_1
Description: NF0354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0354_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 22 - 559
Target Start/End: Complemental strand, 43765024 - 43764489
Alignment:
| Q |
22 |
catcatcatcgtcgacatcaccttgaattttagccattcacactcgtatcactttttatttttaatttcatacgctaaaaatggctgataaatttgttac |
121 |
Q |
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| T |
43765024 |
catcatcgtcgtcgacatcaccttgaattttagccattcacactcatatcactttttatttttaatttcatacgctaaaaatggctgataaatt-gttac |
43764926 |
T |
|
| Q |
122 |
atcaataaaagtggctaacaaaacttcaacaattcttttttataaatctgtatctattgtataagttaactaatattcacacnnnnnnnnnnnnnnnnnn |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43764925 |
atcaataaaagtggctaacaaaacttcaacaattcttttttataaatctgtatctattgtataagttaactaatattcacacaaaaaatgttaaaacaaa |
43764826 |
T |
|
| Q |
222 |
nnngtgacagaattcttgtggcctgactctacaagcaggccacttcaatcagtggcgtactaacataaaatgtacaaatcctcaaaacatgtcagaagat |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43764825 |
aaagtgacagaattcttgtggcctgactctacaagcaggccacttcaatcagtggcgtactaacataaaatgtacaaatcctcaaaacatgtcagaagat |
43764726 |
T |
|
| Q |
322 |
tttgcatctaacatgaatttacctatgaccaaaatcctacttctaagttctagctaagcaccatacttcaannnnnnnnngcaatgctacattgggaatc |
421 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
43764725 |
tttgcatctaacatgaatttacctatgaccaaaatcctacttctaagttctagctaagcaccatacttcaa-ttttttttgcaatgctatattgggaatc |
43764627 |
T |
|
| Q |
422 |
caaggccttgatattgaaaactcctttaggactgtttccacttttaccaatcaaagccactaagaaaatgcaaaattcaatgagctttgaattcgaggga |
521 |
Q |
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| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43764626 |
ctaggcctttatattgaaaactcctttaggaatgtttccacttttaccaatcaaagccactaagaaaatgcaaaattcaatgagctttgaattcgaggga |
43764527 |
T |
|
| Q |
522 |
ttgtaaatttggaaaccaacaatataatggtgatgatg |
559 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
43764526 |
ttgtaaatttggaaaccaacaatataatggtgatgatg |
43764489 |
T |
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