View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0354_low_3 (Length: 291)
Name: NF0354_low_3
Description: NF0354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0354_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 74; Significance: 6e-34; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 111 - 196
Target Start/End: Original strand, 27996330 - 27996415
Alignment:
| Q |
111 |
ccttgttctcggatttggttttgagttttctgaaaatagcgttcttgtcggtgaagctatcggaagccattgaaatgcgattaagg |
196 |
Q |
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| T |
27996330 |
ccttgttttcggatttggttttgagttttctgaaaacggcgttcttgtcggtgaagctatcggaagccattgaaatgcgattaagg |
27996415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 111 - 196
Target Start/End: Original strand, 28053632 - 28053717
Alignment:
| Q |
111 |
ccttgttctcggatttggttttgagttttctgaaaatagcgttcttgtcggtgaagctatcggaagccattgaaatgcgattaagg |
196 |
Q |
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| T |
28053632 |
ccttgttttcggatttggttttgagttttctgaaaacggcgttcttgtcggtgaagctatcggaagccattgaaatgcgattaagg |
28053717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 27996233 - 27996265
Alignment:
| Q |
1 |
atcgcagatctgaacccgatctcgagaatcatg |
33 |
Q |
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| T |
27996233 |
atcgcagatctgaacccgatctcgagaatcatg |
27996265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 28053535 - 28053567
Alignment:
| Q |
1 |
atcgcagatctgaacccgatctcgagaatcatg |
33 |
Q |
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| T |
28053535 |
atcgcagatctgaacccgatctcgagaatcatg |
28053567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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