View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0354_low_5 (Length: 254)
Name: NF0354_low_5
Description: NF0354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0354_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 138 - 231
Target Start/End: Original strand, 24928792 - 24928884
Alignment:
| Q |
138 |
aaaaaacatacccaagttggacaaatcaagttcctcagagttttgaagaagtagaatgtcattcttttcattctctttctctgctcctcctcat |
231 |
Q |
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| T |
24928792 |
aaaaaacatacccaagttggacaaatcaagttcctcagagttttgaagaagtagaaggtcattcttttcattctctttctct-ctcctcctcat |
24928884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 52 - 137
Target Start/End: Original strand, 24927391 - 24927476
Alignment:
| Q |
52 |
tcaatggcatttgtgactccttgtctaaagtaggaaaaagcggtgtatcaggtggtgtaagaagcctgataacaaaaaactcttgt |
137 |
Q |
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| T |
24927391 |
tcaatggcatttgtgactccttgtctaaagtaggaaaaagtggtgtatcaggtggtgtaagaagcctgataacgaaaaactcttgt |
24927476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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