View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0354_low_9 (Length: 223)

Name: NF0354_low_9
Description: NF0354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0354_low_9
NF0354_low_9
[»] chr2 (1 HSPs)
chr2 (30-141)||(17440117-17440229)
[»] chr6 (13 HSPs)
chr6 (24-150)||(9167440-9167565)
chr6 (25-109)||(33305197-33305281)
chr6 (26-140)||(33263317-33263434)
chr6 (1-99)||(33359439-33359537)
chr6 (24-132)||(33058251-33058362)
chr6 (1-56)||(33410706-33410761)
chr6 (22-109)||(33272515-33272600)
chr6 (24-150)||(33286219-33286344)
chr6 (27-150)||(31562100-31562222)
chr6 (78-134)||(33399715-33399771)
chr6 (22-99)||(33388768-33388842)
chr6 (24-70)||(33401373-33401419)
chr6 (87-140)||(33410642-33410695)
[»] chr4 (2 HSPs)
chr4 (15-68)||(31157988-31158041)
chr4 (15-53)||(31018547-31018585)
[»] scaffold1408 (1 HSPs)
scaffold1408 (24-56)||(1395-1427)
[»] scaffold0428 (1 HSPs)
scaffold0428 (24-56)||(7141-7173)


Alignment Details
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 30 - 141
Target Start/End: Original strand, 17440117 - 17440229
Alignment:
Q  30 ctatggaaaagcaagaaggtactataactcctcttttta-ttaatgtttatctttgaaatataaacaaattcgaaacaattttgctataatcacagtaat 128  Q
    |||||||||| ||||||||||| |||| | ||||| ||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||  |||||    
T  17440117 ctatggaaaaacaagaaggtaccataaattctcttattaattaatgtttatctttgaaatataaacaaattcgaaacaattttcttataatcaatgtaat 17440216  T
Q  129 ggctctaattttt 141  Q
    ||||||| |||||    
T  17440217 ggctctatttttt 17440229  T

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Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 150
Target Start/End: Complemental strand, 9167565 - 9167440
Alignment:
Q  24 aaacaactatggaaaagcaagaaggtactataactcctctttttattaatgtttatctttgaaatataaacaaattcgaaacaattttgctataatcaca 123  Q
    |||||||||||||||| ||| ||||||||||||   ||||| ||||||  |||||| || ||||||||||||||||||||||||||||  || ||||| |    
T  9167565 aaacaactatggaaaaacaaaaaggtactataaactctcttattattaccgtttattttagaaatataaacaaattcgaaacaattttcttacaatcaaa 9167466  T
Q  124 gtaatggctctaatttttgttggtttt 150  Q
    ||||||||||| |||||||||||||||    
T  9167465 gtaatggctct-atttttgttggtttt 9167440  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 33305281 - 33305197
Alignment:
Q  25 aacaactatggaaaagcaagaaggtactataactcctctttttattaatgtttatctttgaaatataaacaaattcgaaacaatt 109  Q
    |||||||||||| || |||||||||||||||| | ||||| ||||||||||||||||| |||||||||||||| | |||||||||    
T  33305281 aacaactatggacaaacaagaaggtactataaattctcttattattaatgtttatcttagaaatataaacaaaattgaaacaatt 33305197  T

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Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 26 - 140
Target Start/End: Complemental strand, 33263434 - 33263317
Alignment:
Q  26 acaactatggaaaagcaagaaggtactataactcctctttttattaatgtttatc---tttgaaatataaacaaattcgaaacaattttgctataatcac 122  Q
    |||||||||||||| |||||||||||||||| | ||||| |||||||| || |||   || ||||||||| |||||||||||||||| |  ||||||||     
T  33263434 acaactatggaaaaacaagaaggtactataaattctcttattattaatattcatcatcttagaaatataaccaaattcgaaacaattctcttataatcaa 33263335  T
Q  123 agtaatggctctaatttt 140  Q
    ||||||||||||| ||||    
T  33263334 agtaatggctctattttt 33263317  T

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Target: chr6; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 33359537 - 33359439
Alignment:
Q  1 tgatcttgaagagcagcagcctcaaacaactatggaaaagcaagaaggtactataactcctctttttattaatgtttatctttgaaatataaacaaatt 99  Q
    ||||||||||||  |||||| | |||||||||||||||| |||||||||| ||||| | ||||| |||||||||||||| || ||||||||||| ||||    
T  33359537 tgatcttgaagaaaagcagcattaaacaactatggaaaaacaagaaggtaatataaattctcttattattaatgtttattttagaaatataaaccaatt 33359439  T

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Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 33058362 - 33058251
Alignment:
Q  24 aaacaactatggaaaagcaagaaggtactataactcctctttttattaatgttt---atctttgaaatataaacaaattcgaaacaattttgctataatc 120  Q
    |||||||||||||||| |||||||||||||||| | || || |||||||| |||   ||||| ||||||||||||||||| |||||||| |  || ||||    
T  33058362 aaacaactatggaaaaacaagaaggtactataaattctattattattaatatttatcatcttagaaatataaacaaattcaaaacaattctcttacaatc 33058263  T
Q  121 acagtaatggct 132  Q
    | ||||||||||    
T  33058262 aaagtaatggct 33058251  T

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Target: chr6; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 33410761 - 33410706
Alignment:
Q  1 tgatcttgaagagcagcagcctcaaacaactatggaaaagcaagaaggtactataa 56  Q
    ||||||||||||  |||||| |||||||||||||||||||||||||||||||||||    
T  33410761 tgatcttgaagaatagcagcttcaaacaactatggaaaagcaagaaggtactataa 33410706  T

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Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 109
Target Start/End: Complemental strand, 33272600 - 33272515
Alignment:
Q  22 tcaaacaactatggaaaagcaagaaggtac-tataactcctctttttattaatgtttatctttgaaatataaacaaattcgaaacaatt 109  Q
    |||||||||||||||||| ||||||||||| ||||| | || ||   ||||||||||||||| |||||||||||||||| |||||||||    
T  33272600 tcaaacaactatggaaaaacaagaaggtacctataaattctatt---attaatgtttatcttagaaatataaacaaatttgaaacaatt 33272515  T

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Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 150
Target Start/End: Complemental strand, 33286344 - 33286219
Alignment:
Q  24 aaacaactatggaaaagcaagaaggtactataactcctctttttattaatgtttatctttgaaatataaacaaattcgaaacaattttgctataatcaca 123  Q
    ||||||||||||| ||  ||||||||||||||| |  |||| |||| |||||| ||||| |||||||||||||||| ||||||||| |  || ||||| |    
T  33286344 aaacaactatggagaaagaagaaggtactataaattatcttattataaatgttcatcttagaaatataaacaaatttgaaacaattctcttaaaatcaaa 33286245  T
Q  124 gtaatggctctaatttttgttggtttt 150  Q
     |||||||||  ||||||||| |||||    
T  33286244 ttaatggctc-catttttgtttgtttt 33286219  T

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Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 27 - 150
Target Start/End: Original strand, 31562100 - 31562222
Alignment:
Q  27 caactatggaaaagcaagaaggtactataactcctctttttattaatgtttatctttgaaatataaacaaattcgaaacaattttgctataatcacagta 126  Q
    |||||||||| || |||||||||||| ||| |  |||| |||||| |  ||||||| ||| |||||||||||| ||||||||| |  | |||||| ||||    
T  31562100 caactatggacaaacaagaaggtactgtaaattatcttattattactaattatcttagaactataaacaaattagaaacaattatcttttaatcaaagta 31562199  T
Q  127 atggctctaatttttgttggtttt 150  Q
    |||||||| ||||||||| |||||    
T  31562200 atggctct-atttttgtttgtttt 31562222  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 33399771 - 33399715
Alignment:
Q  78 atctttgaaatataaacaaattcgaaacaattttgctataatcacagtaatggctct 134  Q
    ||||| |||||||||||||||||||||||||| |  |||||||| ||||||| ||||    
T  33399771 atcttagaaatataaacaaattcgaaacaattcttttataatcaaagtaatgtctct 33399715  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 33388842 - 33388768
Alignment:
Q  22 tcaaacaactatggaaaagcaagaaggtactataactcctctttttattaatgtttatctttgaaatataaacaaatt 99  Q
    |||||||||||||||| | |||||||||| ||||   | | |  ||||||||||||||||| ||||||||||||||||    
T  33388842 tcaaacaactatggaagaacaagaaggtattata---catttgattattaatgtttatcttagaaatataaacaaatt 33388768  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 33401419 - 33401373
Alignment:
Q  24 aaacaactatggaaaagcaagaaggtactataactcctctttttatt 70  Q
    |||||||||||||||| |||||||||||||||| | ||||| |||||    
T  33401419 aaacaactatggaaaaacaagaaggtactataaattctcttattatt 33401373  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 140
Target Start/End: Complemental strand, 33410695 - 33410642
Alignment:
Q  87 atataaacaaattcgaaacaattttgctataatcacagtaatggctctaatttt 140  Q
    |||||||||||||| |||||||| || |||||||| ||||||| ||||| ||||    
T  33410695 atataaacaaattcaaaacaattctgttataatcaaagtaatgtctctattttt 33410642  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 31158041 - 31157988
Alignment:
Q  15 agcagcctcaaacaactatggaaaagcaagaaggtactataactcctcttttta 68  Q
    |||||| |||||||||||||||||  |||||||||||||||| | |||||||||    
T  31158041 agcagcgtcaaacaactatggaaagacaagaaggtactataaattctcttttta 31157988  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 31018585 - 31018547
Alignment:
Q  15 agcagcctcaaacaactatggaaaagcaagaaggtacta 53  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  31018585 agcagcatcaaacaactatggaaaggcaagaaggtacta 31018547  T

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Target: scaffold1408 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 1427 - 1395
Alignment:
Q  24 aaacaactatggaaaagcaagaaggtactataa 56  Q
    |||||||||||||||| ||||||||||||||||    
T  1427 aaacaactatggaaaaacaagaaggtactataa 1395  T

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Target: scaffold0428 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 7173 - 7141
Alignment:
Q  24 aaacaactatggaaaagcaagaaggtactataa 56  Q
    |||||||||||||||| ||||||||||||||||    
T  7173 aaacaactatggaaaaacaagaaggtactataa 7141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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