View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0355_high_2 (Length: 343)
Name: NF0355_high_2
Description: NF0355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0355_high_2
Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 12 - 270
Target Start/End: Complemental strand, 2622155 - 2621897
Alignment:
Q
12
cagaacctgtggaattttgatcttcttcaaaccaaccaacttcaaatgtgagtatcttagaaaacatcttttctctaatcctcttagtcaagtactctcc
111
Q
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
2622155
cagaacctgtagaattttgatcttcatcaaaccaaccaacttcaaatgtgagtatcttagaaaacatcttttctctaatcctcttagtcaagtactctcc
2622056
T
Q
112
catgtaagcaaagctataatgttgaagcacattaacaaccattgagataacagccaaccctagaaaacaaagtgcataaatcctaatttgcttcttgatc
211
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
2622055
catgtaagcaaagctataatgttgaagcacattaacaaccattgagataacagccaaccctagaaaacaaagtgcataaatcctaatttgcttcttgatc
2621956
T
Q
212
tcatcatggttctccaaaaaataaaccgatataaccgaccccaatccaaatgaaaacac
270
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
2621955
tcatcatggttctccaaaaaataaaccgatataaccgaccccaatccaaatgaaaacac
2621897
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 270
Target Start/End: Complemental strand, 2590600 - 2590342
Alignment:
Q
12
cagaacctgtggaattttgatcttcttcaaaccaaccaacttcaaatgtgagtatcttagaaaacatcttttctctaatcctcttagtcaagtactctcc
111
Q
|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||| |||||
T
2590600
cagaacctgtagaattttgatcttcatcaaaccaaccaacttcaaatgtgagtatcttggaaaacattcgttctctaaccctcttagtcaagtattctcc
2590501
T
Q
112
catgtaagcaaagctataatgttgaagcacattaacaaccattgagataacagccaaccctagaaaacaaagtgcataaatcctaatttgcttcttgatc
211
Q
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
2590500
catgtaagcaaagctataatgttgaagtacattaacaaccattgagataacagccaaccctagaaaacaaagtgcataaatcctaatttgcttcttgatc
2590401
T
Q
212
tcatcatggttctccaaaaaataaaccgatataaccgaccccaatccaaatgaaaacac
270
Q
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
T
2590400
tcatcatggttctccaaaaaataaaccgatataaccgaccccaatccaaaagaatacac
2590342
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 16 - 254
Target Start/End: Original strand, 2642494 - 2642732
Alignment:
Q
16
acctgtggaattttgatcttcttcaaaccaaccaacttcaaatgtgagtatcttagaaaacatcttttctctaatcctcttagtcaagtactctcccatg
115
Q
|||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||| |||||||||
T
2642494
acctgtagaattttgatcttcatcaaaccaaccaacttcaaatgtgagtatcttggaaaacattcgttctctaaccctcttagtcaagtattctcccatg
2642593
T
Q
116
taagcaaagctataatgttgaagcacattaacaaccattgagataacagccaaccctagaaaacaaagtgcataaatcctaatttgcttcttgatctcat
215
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||
T
2642594
taagcaaagctataatgttgaagcacattaacaaccattgagataacagccaaccctagaaaacaaaatgcatagatcctaatttgcctcttgatctcat
2642693
T
Q
216
catggttctccaaaaaataaaccgatataaccgacccca
254
Q
|||||| |||||||||||||| |||||||| |||||||
T
2642694
catggtcttccaaaaaataaactgatataactgacccca
2642732
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 12 - 261
Target Start/End: Original strand, 2674327 - 2674576
Alignment:
Q
12
cagaacctgtggaattttgatcttcttcaaaccaaccaacttcaaatgtgagtatcttagaaaacatcttttctctaatcctcttagtcaagtactctcc
111
Q
|||||||||| |||||| ||||||| |||||||||||||||||||| ||||||||||| ||||||||| ||||||||| |||||||||||||||||||||
T
2674327
cagaacctgtagaatttcgatcttcatcaaaccaaccaacttcaaaagtgagtatcttggaaaacatcctttctctaaccctcttagtcaagtactctcc
2674426
T
Q
112
catgtaagcaaagctataatgttgaagcacattaacaaccattgagataacagccaaccctagaaaacaaagtgcataaatcctaatttgcttcttgatc
211
Q
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||
T
2674427
catgtaagcaaagctataatgttgaagtacattaacaaccaatgagataacagccaaccctagaaaacaaaacacatagatcctaatttgcttcttaatc
2674526
T
Q
212
tcatcatggttctccaaaaaataaaccgatataaccgaccccaatccaaa
261
Q
|||||||||| ||||| ||||||||| |||| ||||||||||||| ||||
T
2674527
tcatcatggtcctccagaaaataaactgatacaaccgaccccaatgcaaa
2674576
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 12 - 254
Target Start/End: Original strand, 2570839 - 2571081
Alignment:
Q
12
cagaacctgtggaattttgatcttcttcaaaccaaccaacttcaaatgtgagtatcttagaaaacatcttttctctaatcctcttagtcaagtactctcc
111
Q
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||
T
2570839
cagaacctgtagaattttgatcttcatcaaaccaaccaacttcaaatgtgagtatcttagaaaacattttttctctaaccctcttagtcaaatactctcc
2570938
T
Q
112
catgtaagcaaagctataatgttgaagcacattaacaaccattgagataacagccaaccctagaaaacaaagtgcataaatcctaatttgcttcttgatc
211
Q
||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||| |||||||||||||| |||||||||||||||| |||||||||
T
2570939
catgtaagcaaagctataatgttgaagcatattaataaccattgaaataacagccagccctagaaaacaaaaaccataaatcctaatttgtttcttgatc
2571038
T
Q
212
tcatcatggttctccaaaaaataaaccgatataaccgacccca
254
Q
||||| |||| ||| | ||||||||| ||||||||||||||||
T
2571039
tcatcgtggtcctcaataaaataaactgatataaccgacccca
2571081
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 16 - 269
Target Start/End: Complemental strand, 2449942 - 2449689
Alignment:
Q
16
acctgtggaattttgatcttcttcaaaccaaccaacttcaaatgtgagtatcttagaaaacatcttttctctaatcctcttagtcaagtactctcccatg
115
Q
|||||| |||||||||||||| |||||||||||||||||||| ||||||||||| ||||||| ||||||||| ||||||||| |||||||||||||||
T
2449942
acctgtagaattttgatcttcatcaaaccaaccaacttcaaaagtgagtatcttggaaaacactctttctctaaccctcttagttaagtactctcccatg
2449843
T
Q
116
taagcaaagctataatgttgaagcacattaacaaccattga-gataacagccaaccctagaaaacaaagtgcataaatcctaatttgcttcttgatctca
214
Q
|| ||||| | |||||| ||||||||||||| ||||||||| ||||| || ||||||||||||||||| |||||||||||| |||||||||||||||
T
2449842
tatgcaaaacaataatgctgaagcacattaaaaaccattgaggataa-ggctaaccctagaaaacaaagcatataaatcctaatctgcttcttgatctca
2449744
T
Q
215
tcatggttctccaaaaaataaaccgatataaccgaccccaatccaaatgaaaaca
269
Q
|||||||| | | ||||||||| || ||| ||||||| | ||||||||||||
T
2449743
tcatggttgttaagaaaataaacagaaatagttgaccccattgcaaatgaaaaca
2449689
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 23 - 241
Target Start/End: Complemental strand, 2436732 - 2436514
Alignment:
Q
23
gaattttgatcttcttcaaaccaaccaacttcaaatgtgagtatcttagaaaacatcttttctctaatcctcttagtcaagtactctcccatgtaagcaa
122
Q
||||||||||| || |||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
T
2436732
gaattttgatcctcatcaaaccaaccaacttcaaaagtgagtatcttggaaaacattctttctctaatcctcttagtcaagtactctcccatgtaagcaa
2436633
T
Q
123
agctataatgttgaagcacattaacaaccattgagataacagccaaccctagaaaacaaagtgcataaatcctaatttgcttcttgatctcatcatggtt
222
Q
||||||| |||| ||||| ||| | ||| || ||| | |||||||||||||||||||| ||||| |||||||| |||||||| ||||||||| |||
T
2436632
agctatactgttcaagcatattgaaaacaatagaggccaaagccaaccctagaaaacaaaaagcatacatcctaatctgcttcttcatctcatcacggtc
2436533
T
Q
223
ctccaaaaaataaaccgat
241
Q
| || |||||||||||||
T
2436532
attcagaaaataaaccgat
2436514
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
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