View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0355_high_5 (Length: 283)
Name: NF0355_high_5
Description: NF0355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0355_high_5 |
 | |
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| [»] scaffold0024 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 719743 - 720002
Alignment:
| Q |
1 |
ttccgtccagatgtagatggtgttggttggcgatgcgacgatggttgtgggtatgccatccgcatcgcagctctcccctgttctctcgacggtggttcgt |
100 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
719743 |
ttccgtccagatgtagatggtggtggttggcgatgcgacgatggtggtgggtatgccatccgcatcgcagctctcccctgttctc-------------ga |
719829 |
T |
|
| Q |
101 |
cggtggtacaggttttagacgaggtttattttggtccatcggtagagtcgacgatttgggttcactcgaatcgtgccgccgtgactaggtttgaggttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
719830 |
cggtggtacaggttttagacgaggtttattttggtccatcggtagagtcgacgatttgggttcactcgaatcgtgccgccgtgactaggtttgaggttct |
719929 |
T |
|
| Q |
201 |
gtcatatacatctattcggtttagacggttgctgcagatttgggtttgtctctttgcaggttcggtttctctg |
273 |
Q |
| |
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|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
719930 |
gtcatatacatctattcggtttggatggttgctgcagatttgggtttgtctctttgcaggttcggtttctctg |
720002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 46027783 - 46028044
Alignment:
| Q |
1 |
ttccgtccagatgtagatggtgttggttggcgatgcgacgatggttgtgggtatgccatccgcatcgcagctctcccctgttctctcgacggtggttcgt |
100 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
46027783 |
ttccgtctagatgtagatggtggtggttggcgatgcgacgatggtggtgggtatgccatccgcatcgcagctctcccctattctctcgacggtggttcgt |
46027882 |
T |
|
| Q |
101 |
cggtggtacaggttttagacgaggtttattttggtccatcggtagagtcgacgatttgggttcactcgaatcgtgccgccgtgactaggtttgaggttct |
200 |
Q |
| |
|
|||||||| ||||||||| || ||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
46027883 |
cggtggtataggttttaggcgtggtttattttggtccgtcggtagcgtcgaagatttgggttcactcgaatcgtgccgccgtggctgggtttgaggttct |
46027982 |
T |
|
| Q |
201 |
gtcatatacatctattcggtttagacggttgctgcagatttgggtttgtctctttgcaggtt |
262 |
Q |
| |
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|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
46027983 |
gtcatatacatctattcggtttggatggttgctgcagatttgggtttgtctctttgcaggtt |
46028044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 17811914 - 17812185
Alignment:
| Q |
1 |
ttccgtccagatgtagatggtgttggttggcgatgcgacgatggttgtgggtatgccatccgcatcgcagctctcccctgttctctcgacggtggttcgt |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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|
| T |
17811914 |
ttccgtccagatgtagatggtggtggttggcgatgcgacgatggtggtgggtatgccatccgcatcgcaactctcccttgttctctcgacggtggttcgt |
17812013 |
T |
|
| Q |
101 |
cggtggtacaggttttagacgaggtttattttggtccatcggtagagtcgacgatttgggttcactcgaatcgtgccgccgtgactaggtttgaggttct |
200 |
Q |
| |
|
|||||| ||||||||||| || ||||||||||||||| ||||||| | |||||||||||||||||| ||||||||||||||||| | |||||||| |||| |
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| T |
17812014 |
cggtggcacaggttttaggcgcggtttattttggtccgtcggtagcgccgacgatttgggttcacttgaatcgtgccgccgtgattgggtttgagattct |
17812113 |
T |
|
| Q |
201 |
gtcatatacatctattcggtttagacggttgctgcagatttgggtttgtctctttgcaggttcggtttctct |
272 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||| || |||||||||||| |
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|
| T |
17812114 |
gtcatatacatctattcggtttggacggttgctgcagatttgggtttgtttctttgtagattcggtttctct |
17812185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 32754707 - 32754563
Alignment:
| Q |
1 |
ttccgtccagatgtagatggtgttggttggcgatgcgacgatggttgtgggtatgccatccgcatcgcagctctcccctgttctctcgacggtggttcgt |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32754707 |
ttccgtccagatgtagatggtggtggttggcgatgcgacgatggtggtgggtatgccatccgcatcgcagctctcccctgttctctcgacggtggttcgt |
32754608 |
T |
|
| Q |
101 |
cggtggtacaggttttagacgaggtttattttggtccatcggtag |
145 |
Q |
| |
|
|||||||||| ||||||| || |||||||||||||||||| |||| |
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| T |
32754607 |
cggtggtacaagttttaggcgcggtttattttggtccatcagtag |
32754563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 149 - 254
Target Start/End: Complemental strand, 32753247 - 32753144
Alignment:
| Q |
149 |
cgacgatttgggttcactcgaatcgtgccgccgtgactaggtttgaggttctgtcatatacatctattcggtttagacggttgctgcagatttgggtttg |
248 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||||||| ||| ||| ||||||||| |||| ||||||||||||||||||||||||| |
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| T |
32753247 |
cgacgatttgggttcactcaaatcgtgccgccgtgactgagtttgaggttttgtgata--catctattcagtttggacggttgctgcagatttgggtttg |
32753150 |
T |
|
| Q |
249 |
tctctt |
254 |
Q |
| |
|
|||||| |
|
|
| T |
32753149 |
tctctt |
32753144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 5 - 273
Target Start/End: Original strand, 32828677 - 32828943
Alignment:
| Q |
5 |
gtccagatgtagatggtgttggttggcgatgcgacgatggttgtgggtatgccatccgcatcgcagctctcccctgttctctcgacggtggttcgtcggt |
104 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32828677 |
gtccagatgtagatggcggtggttggcgatgcgacaatggtggtgggtatgccatccgaatcgcagctctcccctgttctctcgacggtggttcgtcggt |
32828776 |
T |
|
| Q |
105 |
ggtacaggttttagacgaggtttattttggtccatcggtagagtcgacgatttgggttcactcgaatcgtgccgccgtgactaggtttgaggttctgtca |
204 |
Q |
| |
|
|||||||||||||| || |||||||| |||||||||||||| | |||||||||||||||| |||||||||||| | ||||||||||||||||||||||| |
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| T |
32828777 |
ggtacaggttttaggcgcggtttattctggtccatcggtagcgccgacgatttgggttcattcgaatcgtgccacagtgactaggtttgaggttctgtc- |
32828875 |
T |
|
| Q |
205 |
tatacatctattcggtttagacggttgctgcagatttgggtttgtctctttgcaggttcggtttctctg |
273 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
32828876 |
-atacatctattcggtttggaaggttgctgcagatttgggtttgtccctttgcaggttcggtttctctg |
32828943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 15853939 - 15853685
Alignment:
| Q |
18 |
tggtgttggttggcgatgcgacgatggttgtgggtatgccatccgcatcgcagctctcccctgttctctcgacggtggttcgtcggtggtacaggtttta |
117 |
Q |
| |
|
||||| ||||||||||||||| |||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15853939 |
tggtggtggttggcgatgcgatgatggtggtgggtatgccattcgcatcgtagctctcccctgttctctcgacggtggttcgtcggtggtacaggtttta |
15853840 |
T |
|
| Q |
118 |
gacgaggtttattttggtccatcggtagagtcgacgatttgggttcactcgaatcgtgccgccgtgactaggtttgaggttctgtcatatacatctattc |
217 |
Q |
| |
|
| || |||||||||||||| | ||||| | ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
15853839 |
ggcgtggtttattttggtctgttggtagcgccgacgatttgggttcactcaaatcgtgccgccgtgactgggtttgaggttctgtcatatacatctattt |
15853740 |
T |
|
| Q |
218 |
ggtttagacggttgctgcagatttgggtttgtctctttgcaggttcggtttctctg |
273 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||| || |||||||||||||||||| |
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|
| T |
15853739 |
ggtttggacggttgctgcagatttaggtttgtct-ttcgcaggttcggtttctctg |
15853685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 34852170 - 34851900
Alignment:
| Q |
1 |
ttccgtccagatgtagatggtgttggttggcgatgcgacgatggttgtgggtatgccatccgcatcgcagctctcccctgttctctcgacggtggttcgt |
100 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
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|
| T |
34852170 |
ttccgtccagatgtagatggttgtggctggcgatgcgacgatggtggtgggtatgccatccgcatcgcaactctcccctgttctctcgacggtggttcat |
34852071 |
T |
|
| Q |
101 |
cggtggtacaggttttagacgaggtttattttggtccatcggtagagtcgacgatttgggttcactcgaatcgtgccgccgtgactaggtttgaggttct |
200 |
Q |
| |
|
||||||||||| |||||| | ||||||||||||||| ||||||| | |||||||||||||||||| |||||||||||| |||||| ||||||||||||| |
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|
| T |
34852070 |
cggtggtacagattttaggtgcggtttattttggtccgtcggtagcgccgacgatttgggttcacttgaatcgtgccgctgtgactgggtttgaggttct |
34851971 |
T |
|
| Q |
201 |
gtcatatacatctattcggtttagacggttgctgcagatttgggtttgtctctttgcaggttcggtttctctg |
273 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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|
| T |
34851970 |
gtc--atacatctattcggtttggacggttgctgcagatttgggtttgtctctttgcaagttcggtatctctg |
34851900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 2 - 206
Target Start/End: Original strand, 61960 - 62164
Alignment:
| Q |
2 |
tccgtccagatgtagatggtgttggttggcgatgcgacgatggttgtgggtatgccatccgcatcgcagctctcccctgttctctcgacggtggttcgtc |
101 |
Q |
| |
|
||||| || |||||||||||| |||||||||||||||||||||| || |||||||||||||||||| |||||| || ||||||||||||||||||||||| |
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| T |
61960 |
tccgttcaaatgtagatggtggtggttggcgatgcgacgatggtagtcggtatgccatccgcatcgtagctcttccatgttctctcgacggtggttcgtc |
62059 |
T |
|
| Q |
102 |
ggtggtacaggttttagacgaggtttattttggtccatcggtagagtcgacgatttgggttcactcgaatcgtgccgccgtgactaggtttgaggttctg |
201 |
Q |
| |
|
|||||| || ||||||| || |||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||| | ||||||||||| || |
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|
| T |
62060 |
ggtggtgcaagttttaggcgcggtttattttggtctgtcggtagcaccgacgatttgggttcactcgaatcgcgccgccgtgaatgggtttgaggttatg |
62159 |
T |
|
| Q |
202 |
tcata |
206 |
Q |
| |
|
||||| |
|
|
| T |
62160 |
tcata |
62164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 62222 - 62267
Alignment:
| Q |
219 |
gtttagacggttgctgcagatttgggtttgtctctttgcaggttcg |
264 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
62222 |
gtttcgacggttgctgcagatctgggtttgtctctctgcaggttcg |
62267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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