View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0355_low_1 (Length: 867)
Name: NF0355_low_1
Description: NF0355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0355_low_1
Alignment Details
Target: chr3 (Bit Score: 446; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 292 - 761
Target Start/End: Original strand, 28536380 - 28536849
Alignment:
Q
292
attcatgaatggtgaaagatgacactttaccttctcatgtgtaaattacacatgagtgaatccatttcatcagtataaagtaatgctctgaaatttcaaa
391
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
T
28536380
attcatgaatggtgaaagatgacactttaccttctcatgtgtaaattacacatgagtgaattcatttcatcagtataaagtaatgctctgaaatttcaaa
28536479
T
Q
392
accaaaaaccagactcgagagtatgataatgtgtggttgatagatgaaacggctgaggttgagcgtgcgaagaaagcaagaaggaagaacgacacaaaaa
491
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
T
28536480
accaaaaaccagactcgagagtatgataatgtgtggttgatagatgaaacggctgacgttgagcgtgcgaagaacgcaagaaggaagaacgacacaaaaa
28536579
T
Q
492
gtttgtagatgtcatatagtactttcattctcctcaacacaatgaaacatattcaagcttgtcaaataaaaatttccactgaattaaccaggaaacatta
591
Q
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
28536580
gtttgtagatgtcatatagtactttcattctcctcaacacaataaaacatattcaagcttgtcaaataaaaatttccactgaattaaccaggaaacatta
28536679
T
Q
592
cgtgtttcgaaactcgatccactctactatgtataattagtaattaccatgaaagatataaggttggccgctttgaaattccatatgaatattcaaacca
691
Q
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
28536680
cgtgtttcgaaactggatccactctactatgtataattagtaattaccatgaaagatataaggttggccgctttgaaattccatatgaatattcaaacca
28536779
T
Q
692
aattcctatatatttgtcattgatgaaaaaataaaagctgaaaacagaatgactcctgtatattaatcat
761
Q
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
28536780
aattcctgtatatttgtcattgatgaaaaaataaaagctgaaaacagaatgactcctgtatattaatcat
28536849
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 32 - 292
Target Start/End: Original strand, 28536057 - 28536317
Alignment:
Q
32
acacattaaaacattgcagtctataacagcaacagaattgtggtcaggcaaataagattctatccaaacaatgtctaggacttaacagagagtatatatt
131
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
28536057
acacattaaaacattgcagtctataacagcaacagaattgtggtcaggcaaataagattctatccaaacaatgtctaggacttaacagagagtatatatt
28536156
T
Q
132
gaacatctgtactagaccaggcagctaccttgcaaatacatgctagactactaaccgaacataccataaagaaataaatgtagttttgaagattaaagca
231
Q
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
28536157
gaacagctgtactagaccaggcagctaccttgcaaatacatgttagactactaaccgaacataccataaagaaataaatgtagttttgaagattaaagca
28536256
T
Q
232
gccacataggtgcaaaatgtgggggaatgcattctctcaattgtaatttaacacgaggata
292
Q
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
T
28536257
gccacataggtgcaaaatgtgggggaatggattctctcaattgtaatttaacacgaggata
28536317
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 695 - 803
Target Start/End: Original strand, 28536833 - 28536941
Alignment:
Q
695
tcctatatatttgtcattgatgaaaaaataaaagctgaaaacagaatgactcctgtatattaatcatggagttaaaccaaagggttattgatgaaattat
794
Q
|||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
28536833
tcctgtatattaatcattgatgaaaaaataaaaggtgaaaacagaatgactcctgtatattaatcatggagttaaaccaaagggttattgatgaaattat
28536932
T
Q
795
cacaggttc
803
Q
|||||||||
T
28536933
cacaggttc
28536941
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 313 - 347
Target Start/End: Complemental strand, 54492190 - 54492156
Alignment:
Q
313
acactttaccttctcatgtgtaaattacacatgag
347
Q
|||||||||||||||||||| ||||||||||||||
T
54492190
acactttaccttctcatgtgaaaattacacatgag
54492156
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 297 - 359
Target Start/End: Complemental strand, 17429217 - 17429155
Alignment:
Q
297
tgaatggtgaaagatgacactttaccttctcatgtgtaaattacacatgagtgaatccatttc
359
Q
|||||||| | |||| |||||||| ||||||| |||||||||||||||| |||||||||||
T
17429217
tgaatggtaagagatcacactttagtatctcatgagtaaattacacatgagagaatccatttc
17429155
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 298 - 347
Target Start/End: Complemental strand, 42971584 - 42971534
Alignment:
Q
298
gaatggtgaaagatgacactttacct-tctcatgtgtaaattacacatgag
347
Q
||||||||| |||||||||||||||| |||||||| ||||||||||||||
T
42971584
gaatggtgagagatgacactttacctctctcatgtaaaaattacacatgag
42971534
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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