View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0355_low_10 (Length: 288)
Name: NF0355_low_10
Description: NF0355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0355_low_10
Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 30 - 271
Target Start/End: Original strand, 31226561 - 31226802
Alignment:
Q
30
ctcatttccttccccctctcttcacggaaaccttcttcgccggagacttaacagtcttagtcttaggcttgacgctcttcaccggagctttcttctttgc
129
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
31226561
ctcatttccttccccctctcttcacggaaaccttcttcgccggagacttaacagtcttagtcttaggcttgacgctcttcaccggagctttcttctttgc
31226660
T
Q
130
cgccgcaactttctttgctgctggctttgcagctgcaattttcttccccggagaagtccttgttgttgtctttgcaacctttgcattaggtttcgctttt
229
Q
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
T
31226661
cgccgcaactttctttgctgctggctttgcagctgcgactttcttccccggagaagtccttgctgttgtctttgcaacctttgcattaggtttcgctttt
31226760
T
Q
230
gcagcagttttggccttagaagcagcttttgacttggtagca
271
Q
||||||||||||||||||||||||||||||||||||||||||
T
31226761
gcagcagttttggccttagaagcagcttttgacttggtagca
31226802
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 30 - 247
Target Start/End: Complemental strand, 31173875 - 31173676
Alignment:
Q
30
ctcatttccttccccctctcttcacggaaaccttcttcgccggagacttaacagtcttagtcttaggcttgacgctcttcaccggagctttcttctttgc
129
Q
|||||||||||||||||||||| | | ||| ||||| ||||||||| |||||||||||||||||||||| ||| ||||||| |||| ||||||||||||
T
31173875
ctcatttccttccccctctcttgatcgcaactttcttagccggagacctaacagtcttagtcttaggcttcacgttcttcactggagttttcttctttgc
31173776
T
Q
130
cgccgcaactttctttgctgctggctttgcagctgcaattttcttccccggagaagtccttgttgttgtctttgcaacctttgcattaggtttcgctttt
229
Q
|||||||||||||| ||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||| ||| ||||
T
31173775
------------------tgctggctttgcagttgcaactttcttccctggagaagtccttgtcgttgtctttgcaacctttgcattaggcttcactttc
31173694
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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