View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0355_low_11 (Length: 283)
Name: NF0355_low_11
Description: NF0355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0355_low_11
[» ] scaffold0024 (2 HSPs)
Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 719743 - 720002
Alignment:
Q
1
ttccgtccagatgtagatggtgttggttggcgatgcgacgatggttgtgggtatgccatccgcatcgcagctctcccctgttctctcgacggtggttcgt
100
Q
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
T
719743
ttccgtccagatgtagatggtggtggttggcgatgcgacgatggtggtgggtatgccatccgcatcgcagctctcccctgttctc-------------ga
719829
T
Q
101
cggtggtacaggttttagacgaggtttattttggtccatcggtagagtcgacgatttgggttcactcgaatcgtgccgccgtgactaggtttgaggttct
200
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
719830
cggtggtacaggttttagacgaggtttattttggtccatcggtagagtcgacgatttgggttcactcgaatcgtgccgccgtgactaggtttgaggttct
719929
T
Q
201
gtcatatacatctattcggtttagacggttgctgcagatttgggtttgtctctttgcaggttcggtttctctg
273
Q
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
T
719930
gtcatatacatctattcggtttggatggttgctgcagatttgggtttgtctctttgcaggttcggtttctctg
720002
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 46027783 - 46028044
Alignment:
Q
1
ttccgtccagatgtagatggtgttggttggcgatgcgacgatggttgtgggtatgccatccgcatcgcagctctcccctgttctctcgacggtggttcgt
100
Q
||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
T
46027783
ttccgtctagatgtagatggtggtggttggcgatgcgacgatggtggtgggtatgccatccgcatcgcagctctcccctattctctcgacggtggttcgt
46027882
T
Q
101
cggtggtacaggttttagacgaggtttattttggtccatcggtagagtcgacgatttgggttcactcgaatcgtgccgccgtgactaggtttgaggttct
200
Q
|||||||| ||||||||| || ||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||| || |||||||||||||
T
46027883
cggtggtataggttttaggcgtggtttattttggtccgtcggtagcgtcgaagatttgggttcactcgaatcgtgccgccgtggctgggtttgaggttct
46027982
T
Q
201
gtcatatacatctattcggtttagacggttgctgcagatttgggtttgtctctttgcaggtt
262
Q
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
T
46027983
gtcatatacatctattcggtttggatggttgctgcagatttgggtttgtctctttgcaggtt
46028044
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 17811914 - 17812185
Alignment:
Q
1
ttccgtccagatgtagatggtgttggttggcgatgcgacgatggttgtgggtatgccatccgcatcgcagctctcccctgttctctcgacggtggttcgt
100
Q
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
T
17811914
ttccgtccagatgtagatggtggtggttggcgatgcgacgatggtggtgggtatgccatccgcatcgcaactctcccttgttctctcgacggtggttcgt
17812013
T
Q
101
cggtggtacaggttttagacgaggtttattttggtccatcggtagagtcgacgatttgggttcactcgaatcgtgccgccgtgactaggtttgaggttct
200
Q
|||||| ||||||||||| || ||||||||||||||| ||||||| | |||||||||||||||||| ||||||||||||||||| | |||||||| ||||
T
17812014
cggtggcacaggttttaggcgcggtttattttggtccgtcggtagcgccgacgatttgggttcacttgaatcgtgccgccgtgattgggtttgagattct
17812113
T
Q
201
gtcatatacatctattcggtttagacggttgctgcagatttgggtttgtctctttgcaggttcggtttctct
272
Q
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||| || ||||||||||||
T
17812114
gtcatatacatctattcggtttggacggttgctgcagatttgggtttgtttctttgtagattcggtttctct
17812185
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 32754707 - 32754563
Alignment:
Q
1
ttccgtccagatgtagatggtgttggttggcgatgcgacgatggttgtgggtatgccatccgcatcgcagctctcccctgttctctcgacggtggttcgt
100
Q
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
32754707
ttccgtccagatgtagatggtggtggttggcgatgcgacgatggtggtgggtatgccatccgcatcgcagctctcccctgttctctcgacggtggttcgt
32754608
T
Q
101
cggtggtacaggttttagacgaggtttattttggtccatcggtag
145
Q
|||||||||| ||||||| || |||||||||||||||||| ||||
T
32754607
cggtggtacaagttttaggcgcggtttattttggtccatcagtag
32754563
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 149 - 254
Target Start/End: Complemental strand, 32753247 - 32753144
Alignment:
Q
149
cgacgatttgggttcactcgaatcgtgccgccgtgactaggtttgaggttctgtcatatacatctattcggtttagacggttgctgcagatttgggtttg
248
Q
||||||||||||||||||| |||||||||||||||||| |||||||||| ||| ||| ||||||||| |||| |||||||||||||||||||||||||
T
32753247
cgacgatttgggttcactcaaatcgtgccgccgtgactgagtttgaggttttgtgata--catctattcagtttggacggttgctgcagatttgggtttg
32753150
T
Q
249
tctctt
254
Q
||||||
T
32753149
tctctt
32753144
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 5 - 273
Target Start/End: Original strand, 32828677 - 32828943
Alignment:
Q
5
gtccagatgtagatggtgttggttggcgatgcgacgatggttgtgggtatgccatccgcatcgcagctctcccctgttctctcgacggtggttcgtcggt
104
Q
|||||||||||||||| | |||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
T
32828677
gtccagatgtagatggcggtggttggcgatgcgacaatggtggtgggtatgccatccgaatcgcagctctcccctgttctctcgacggtggttcgtcggt
32828776
T
Q
105
ggtacaggttttagacgaggtttattttggtccatcggtagagtcgacgatttgggttcactcgaatcgtgccgccgtgactaggtttgaggttctgtca
204
Q
|||||||||||||| || |||||||| |||||||||||||| | |||||||||||||||| |||||||||||| | |||||||||||||||||||||||
T
32828777
ggtacaggttttaggcgcggtttattctggtccatcggtagcgccgacgatttgggttcattcgaatcgtgccacagtgactaggtttgaggttctgtc-
32828875
T
Q
205
tatacatctattcggtttagacggttgctgcagatttgggtttgtctctttgcaggttcggtttctctg
273
Q
||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||
T
32828876
-atacatctattcggtttggaaggttgctgcagatttgggtttgtccctttgcaggttcggtttctctg
32828943
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 15853939 - 15853685
Alignment:
Q
18
tggtgttggttggcgatgcgacgatggttgtgggtatgccatccgcatcgcagctctcccctgttctctcgacggtggttcgtcggtggtacaggtttta
117
Q
||||| ||||||||||||||| |||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
T
15853939
tggtggtggttggcgatgcgatgatggtggtgggtatgccattcgcatcgtagctctcccctgttctctcgacggtggttcgtcggtggtacaggtttta
15853840
T
Q
118
gacgaggtttattttggtccatcggtagagtcgacgatttgggttcactcgaatcgtgccgccgtgactaggtttgaggttctgtcatatacatctattc
217
Q
| || |||||||||||||| | ||||| | ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
T
15853839
ggcgtggtttattttggtctgttggtagcgccgacgatttgggttcactcaaatcgtgccgccgtgactgggtttgaggttctgtcatatacatctattt
15853740
T
Q
218
ggtttagacggttgctgcagatttgggtttgtctctttgcaggttcggtttctctg
273
Q
||||| |||||||||||||||||| ||||||||| || ||||||||||||||||||
T
15853739
ggtttggacggttgctgcagatttaggtttgtct-ttcgcaggttcggtttctctg
15853685
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 34852170 - 34851900
Alignment:
Q
1
ttccgtccagatgtagatggtgttggttggcgatgcgacgatggttgtgggtatgccatccgcatcgcagctctcccctgttctctcgacggtggttcgt
100
Q
||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
T
34852170
ttccgtccagatgtagatggttgtggctggcgatgcgacgatggtggtgggtatgccatccgcatcgcaactctcccctgttctctcgacggtggttcat
34852071
T
Q
101
cggtggtacaggttttagacgaggtttattttggtccatcggtagagtcgacgatttgggttcactcgaatcgtgccgccgtgactaggtttgaggttct
200
Q
||||||||||| |||||| | ||||||||||||||| ||||||| | |||||||||||||||||| |||||||||||| |||||| |||||||||||||
T
34852070
cggtggtacagattttaggtgcggtttattttggtccgtcggtagcgccgacgatttgggttcacttgaatcgtgccgctgtgactgggtttgaggttct
34851971
T
Q
201
gtcatatacatctattcggtttagacggttgctgcagatttgggtttgtctctttgcaggttcggtttctctg
273
Q
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||
T
34851970
gtc--atacatctattcggtttggacggttgctgcagatttgggtttgtctctttgcaagttcggtatctctg
34851900
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 2 - 206
Target Start/End: Original strand, 61960 - 62164
Alignment:
Q
2
tccgtccagatgtagatggtgttggttggcgatgcgacgatggttgtgggtatgccatccgcatcgcagctctcccctgttctctcgacggtggttcgtc
101
Q
||||| || |||||||||||| |||||||||||||||||||||| || |||||||||||||||||| |||||| || |||||||||||||||||||||||
T
61960
tccgttcaaatgtagatggtggtggttggcgatgcgacgatggtagtcggtatgccatccgcatcgtagctcttccatgttctctcgacggtggttcgtc
62059
T
Q
102
ggtggtacaggttttagacgaggtttattttggtccatcggtagagtcgacgatttgggttcactcgaatcgtgccgccgtgactaggtttgaggttctg
201
Q
|||||| || ||||||| || |||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||| | ||||||||||| ||
T
62060
ggtggtgcaagttttaggcgcggtttattttggtctgtcggtagcaccgacgatttgggttcactcgaatcgcgccgccgtgaatgggtttgaggttatg
62159
T
Q
202
tcata
206
Q
|||||
T
62160
tcata
62164
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 62222 - 62267
Alignment:
Q
219
gtttagacggttgctgcagatttgggtttgtctctttgcaggttcg
264
Q
|||| |||||||||||||||| ||||||||||||| ||||||||||
T
62222
gtttcgacggttgctgcagatctgggtttgtctctctgcaggttcg
62267
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
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