View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0355_low_12 (Length: 266)
Name: NF0355_low_12
Description: NF0355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0355_low_12
Alignment Details
Target: chr1 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 29 - 236
Target Start/End: Complemental strand, 45212099 - 45211888
Alignment:
Q
29
agcagcacagaccatcgaagttagcctcacacccatgaatctttgatgtaaaacagagatttatgtgaattggcccctcttgcctacatccacggaagca
128
Q
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
T
45212099
agcagcacacaccatcgaagttagccacacacccatgaatctttgatgtaaaacagagattgatgtgaattggcacctcttgcctacatccacggaagca
45212000
T
Q
129
ccttaacaaatatattcatcatctcaaataaaattaaaa----gaatctatagccgagctcaatatgtatatcactctacaatactcctactcaaaagtt
224
Q
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
T
45211999
ccttaacaaatatattcatcacctcaaataaaattaaaagaatgaatctatagccgagctcaatatgtatatcactctacaatactcctactcaagagtt
45211900
T
Q
225
gcaagaaatgat
236
Q
||||||||||||
T
45211899
gcaagaaatgat
45211888
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 164
Target Start/End: Complemental strand, 15679903 - 15679873
Alignment:
Q
134
acaaatatattcatcatctcaaataaaatta
164
Q
|||||||||||||||||||||||||||||||
T
15679903
acaaatatattcatcatctcaaataaaatta
15679873
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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